RNA id: TU38173


Basic Information

Item Value
RNA id TU38173
length 440
RNA type TUCP
GC content 0.52
exon number 1
gene id G30527
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 73792 ~ 74231 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cactgataatctcgttatcatggcacctgtcagtgggtggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagaaggaaaaatgggcagcgtaaggatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggctcattgatgcacgtggggagcgaaggctggcccgtgtgctccgatccaacagacgagctactgtagctcaaatcgCTGAacaagtgaatgctggttctgatagaaaggtgatCCGGCAACTTGAGTTGAAGGCTGGGGAGGTGGCCTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38196 lncRNA downstream 153745 227976 ~ 282144 (+) True G30549
TU38203 lncRNA downstream 181095 255326 ~ 255697 (+) True G30554
TU38232 lncRNA downstream 296215 370446 ~ 371798 (+) True G30583
TU38301 lncRNA downstream 368937 443168 ~ 496520 (+) False G30619
TU38304 lncRNA downstream 418329 492560 ~ 496520 (+) True G30619
AMCG00018982 mRNA downstream 111615 185846 ~ 189716 (+) True AMCG00018982
AMCG00018978 mRNA downstream 122087 196318 ~ 200408 (+) True AMCG00018978
AMCG00018977 mRNA downstream 126579 200810 ~ 232866 (+) True AMCG00018977
AMCG00018979 mRNA downstream 159158 233389 ~ 234148 (+) True AMCG00018979
AMCG00018980 mRNA downstream 159956 234187 ~ 237244 (+) True AMCG00018980
TU38241 other downstream 321270 395501 ~ 398672 (+) True G30589
TU38342 other downstream 480535 554766 ~ 556904 (+) False AMCG00018999
TU38402 other downstream 921096 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 1159263 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 1179135 1253366 ~ 1253735 (+) True G30877

Expression Profile