RNA id: TU38232


Basic Information

Item Value
RNA id TU38232
length 269
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G30583
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 370446 ~ 371798 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACTGACACGCTGTCCTCTATATCCAGCCTGTAGtacactgttacacactgacacactgtcctCTATACCCAGCCTGTagtacagtcacacactgacacactgtcccCTATACCCAGTCTGTagtacagtcacacactgacacactgtcctCTATACCCAGCCTGTagtacagtcacacactgacacgctgtCCTTTATACCCAGCCTGCAGtactgtcacacactgacacactgtcctCTATACCCAGCCTGTAGTACAGTCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38196 lncRNA upstream 88302 227976 ~ 282144 (+) True G30549
TU38301 lncRNA downstream 71370 443168 ~ 496520 (+) False G30619
TU38304 lncRNA downstream 120762 492560 ~ 496520 (+) True G30619
TU38302 lncRNA downstream 122522 494320 ~ 496520 (+) False G30619
TU38383 lncRNA downstream 367428 739226 ~ 741433 (+) False AMCG00019012
TU38404 lncRNA downstream 637463 1009261 ~ 1026744 (+) True G30699
AMCG00018984 mRNA upstream 111155 255473 ~ 259291 (+) True AMCG00018984
AMCG00018983 mRNA upstream 114999 246098 ~ 255447 (+) True AMCG00018983
AMCG00018981 mRNA upstream 124674 237250 ~ 245772 (+) True AMCG00018981
AMCG00018980 mRNA upstream 133202 234187 ~ 237244 (+) True AMCG00018980
AMCG00018979 mRNA upstream 136298 233389 ~ 234148 (+) True AMCG00018979
AMCG00018990 mRNA downstream 39685 411483 ~ 414872 (+) True AMCG00018990
AMCG00018989 mRNA downstream 88361 460159 ~ 473258 (+) True AMCG00018989
AMCG00018998 mRNA downstream 126851 498649 ~ 503431 (+) True AMCG00018998
AMCG00019000 mRNA downstream 134837 506635 ~ 514431 (+) True AMCG00019000
AMCG00018999 mRNA downstream 177718 549516 ~ 555351 (+) True AMCG00018999
TU38173 other upstream 296215 73792 ~ 74231 (+) True G30527
TU38241 other downstream 23703 395501 ~ 398672 (+) True G30589
TU38342 other downstream 182968 554766 ~ 556904 (+) False AMCG00018999
TU38402 other downstream 623529 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 861696 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 881568 1253366 ~ 1253735 (+) True G30877

Expression Profile