RNA id: TU38247


Basic Information

Item Value
RNA id TU38247
length 723
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G30594
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 266073 ~ 267927 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccgagattgtatctgctgagatacctattttagtatcatctgcaaatttgacaggTTTACTAACTATCCCAGAATATAGTGTGATATCAGACACCTGAGTTCTCAAACTGGGAAATTAGTCCGATTTAGGTCTCAATTAAGTACCTGAGAGATGAGCTGGAGCACAAACCAACAGGACAGCATGGCCTGAGACCAGAGTCACTTTCCCTGGTGTAGTTGACCACTGTTGTGAACCAGTTTAGCAGGTGGATAATCCACAACTCCTACAGGCCAGGTCAgcacctctctgtctctctgtctctctccatccctctctctctctctgactgccCAGGAGAGCCAGTGGCAGATTGTCGGCGTTACACAGAGCTCCGAAACATCACCAAGGGAGACTGTCACCTTGAAAACGTGGAGGTCAGCTACTGCAGTGGACGCTGTCTGTCCAGGACCAACGTCATCACagagGAGCCCTACCTGCAGGTGCTGTGTGAGTGCTGCAGTTACCATCTGGACCCCCAGAGCCCGGTGCGCTTCCTCAGCCTGCCCTGCCGCAGCGGGGAGCTGGAGCCTGTCGTGCTGCCCAACATCCACAGCTGTGAATGCAACAGCTGCCAGGGGGGAGACCTGGCAACACCTTGAGCGCTTCCAGCAGGACAgactggacacacagacacacagacagacaggctctGTGCGTCTCCAAGCCCCTGTGTAAACCTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38246 lncRNA downstream 6008 259434 ~ 260065 (-) True G30593
TU38187 lncRNA downstream 111556 146745 ~ 154517 (-) False AMCG00018975
TU38186 lncRNA downstream 191923 73888 ~ 74150 (-) True G30539
TU38260 lncRNA upstream 55691 323618 ~ 331967 (-) True AMCG00018988
TU38291 lncRNA upstream 145961 413888 ~ 414282 (-) True G30612
TU38452 lncRNA upstream 185201 453128 ~ 454764 (-) False AMCG00018992
TU38488 lncRNA upstream 254192 522119 ~ 523996 (-) True G30760
TU38518 lncRNA upstream 444785 712712 ~ 733413 (-) True G30784
AMCG00018985 mRNA downstream 68475 191794 ~ 197598 (-) True AMCG00018985
AMCG00018974 mRNA downstream 94083 168042 ~ 171990 (-) True AMCG00018974
AMCG00018975 mRNA downstream 111548 144253 ~ 154525 (-) True AMCG00018975
AMCG00018976 mRNA downstream 165819 94817 ~ 100254 (-) True AMCG00018976
AMCG00018972 mRNA downstream 210961 26747 ~ 55112 (-) True AMCG00018972
AMCG00018986 mRNA upstream 13907 281834 ~ 290903 (-) True AMCG00018986
AMCG00018987 mRNA upstream 30907 298834 ~ 309982 (-) True AMCG00018987
AMCG00018988 mRNA upstream 55282 323209 ~ 337633 (-) False AMCG00018988
AMCG00018996 mRNA upstream 95276 363203 ~ 382072 (-) True AMCG00018996
AMCG00018995 mRNA upstream 114496 382423 ~ 390814 (-) True AMCG00018995
TU38468 other upstream 205644 473571 ~ 475232 (-) False AMCG00018991
TU38469 other upstream 207609 475536 ~ 477076 (-) False AMCG00018991
TU38444 other upstream 230805 498732 ~ 500189 (-) True G30729
TU38506 other upstream 351112 619039 ~ 622075 (-) False AMCG00019007
TU38514 other upstream 363765 631692 ~ 634293 (-) False AMCG00019007

Expression Profile