RNA id: TU38304


Basic Information

Item Value
RNA id TU38304
length 760
lncRNA type inter_gene
GC content 0.63
exon number 3
gene id G30619
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 443168 ~ 496520 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccctctctctcacactgacCTCCAGCCCCCCCCGGAAGCCCTCGGTGAAGCCCTGCAGGTACTCGGTGATGCGGGGTGTGAGGTAGGCGTCCGCCGCGGCGGTCAGGCCCCGGGGCACCGCCCTCACCATGGGCATCACCCGGCTGGACAGGGACACCTGCTGGAAGCCCAGCCTCTCCGCCAGCGCCCCCACCGCCTCCTCGTGGACAGACCACCTGAcccaggggagagagggagagagttgcGTATAATTATGGCATCCTGTATAGCAGCGGTCCCCAACCTTTTTTGCACCACGGACCGGTCTCATATATGCAATATTTTCCCGGACCGGCTGTCCAGGGGGGTGTCGGTGTCGTAAAAACTTTTCAACCATGTCGCTGTCATTGCGGAAATACAATGCTTTTGTGGCTATCTCGGGATATTCAGCCTTGATTTTAAtGTGTAGGagtgcagcagcagcacggcCAGGCTGGTGATCCCACGCGACAGCACACCCCGCAGGTCGGCCTCCACTTGCACCAGATCCACAGACCGCCACACACTCACTGCCTCGCCTGTACTGCCTCCAGGTCGAACAGCAGGGGCCGAGCCTGGGTGCCGATGTGCAGCAGGTCCTTGAAGCCGCGGGTGACGAGCAGGGCTGACCGGGCCCCCTGGCGCTCCAGCAGTGCGTTGGTCGCCACCGTGGTACCCATGCGGATCCAGCCAATCAGAGAGGGATCCAGGGGCTCTTCCCGGGGGAAGACTCGCCCAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38232 lncRNA upstream 120762 370446 ~ 371798 (+) True G30583
TU38196 lncRNA upstream 210416 227976 ~ 282144 (+) True G30549
TU38383 lncRNA downstream 242706 739226 ~ 741433 (+) False AMCG00019012
TU38404 lncRNA downstream 512741 1009261 ~ 1026744 (+) True G30699
TU38405 lncRNA downstream 516491 1013011 ~ 1053885 (+) True G30700
TU38435 lncRNA downstream 641985 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 641985 1138505 ~ 1139858 (+) False G30723
AMCG00018989 mRNA upstream 19302 460159 ~ 473258 (+) True AMCG00018989
AMCG00018990 mRNA upstream 77688 411483 ~ 414872 (+) True AMCG00018990
AMCG00018984 mRNA upstream 233269 255473 ~ 259291 (+) True AMCG00018984
AMCG00018983 mRNA upstream 237113 246098 ~ 255447 (+) True AMCG00018983
AMCG00018981 mRNA upstream 246788 237250 ~ 245772 (+) True AMCG00018981
AMCG00018998 mRNA downstream 2129 498649 ~ 503431 (+) True AMCG00018998
AMCG00019000 mRNA downstream 10115 506635 ~ 514431 (+) True AMCG00019000
AMCG00018999 mRNA downstream 52996 549516 ~ 555351 (+) True AMCG00018999
AMCG00018997 mRNA downstream 62815 559335 ~ 560597 (+) True AMCG00018997
AMCG00019004 mRNA downstream 79437 575957 ~ 586263 (+) True AMCG00019004
TU38241 other upstream 93888 395501 ~ 398672 (+) True G30589
TU38173 other upstream 418329 73792 ~ 74231 (+) True G30527
TU38342 other downstream 58246 554766 ~ 556904 (+) False AMCG00018999
TU38402 other downstream 498807 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 736974 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 756846 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1365309 1861829 ~ 1871379 (+) False AMCG00019064

Expression Profile