RNA id: TU38533


Basic Information

Item Value
RNA id TU38533
length 4412
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G30797
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 834458 ~ 839109 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGCTTGGTTAGAAGATTAGTTTCCAGGTCAGTCCTCCGTGACCATGGGGCTGTCCCTATAGACCTGCTCTACAGGactgctgggctgggctgtgggGGGGCCTCACTGTTGCTGGAGCTCACCTGTCCTGGGCCTCCTCGGGCCGGGCTCTCTTGCCCACTCCTCCCGTGGTGCTGGGTCCGGCCCGCTTGGTGCGCTGGCGGTGCTGCAGCTTGCACTTGGCGCCGCGGGGGCAGACACCGCTCTTGGAGAAGTCTGGACACAGCAGGGTGTGCTTCTTCTtgcactgaaaaacacacagtacGGTTCACCCCACTCAGACTGGTCAACACAGAGAGACTGGTCACCCCACTGACACACTGGTCACCCCACTCAGAATGCTCAAATCATGGTTTggtttttaactttaaataaatctgatggtctttttaaaataaatgtgttagtgtgtgtgtgtgcgtgtgtgcctgtgagtgtgtgtgtgtcagtgtgtgtcagtgtgtgtgtgtgtgtgcgtcagtgtgtgcctgtgagtgtgtgtgtcagtgtgtgcctgtgagtgtgtgtgtgtcagtgtgtgtgtgtcagtgtgtgcctgtgagtgtgtgtgtctcagtgtgtgtgtcaagtgtgtgcctgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtcagtgtgtgcctgtgagtgtgtgtgtcagtgtgtgcctgtgagtgtgtgtgtcagtgtgtgtgtctcagtgtgtgtgtgtgtgtcagacctGCTCTCAGTCCTCAGCCTCATTCTTCAGGAGATTCAATCTCTTCCACCTGTCAGAGGAGCTAATTATACAGCGGGGGGGAGCAGGCTGACCCGTGAAGAGAGGGATAGTGTTACTGCAGGAGGAGTCACggctgcacaaacacacacaaacaagcccTCACACTTGTGGGACAAGGGGGCTGCAGCACCAGACAGGCAGACCGGGCCGGGCCCAGAACCACCAGCGCTCCAGTCCCATGATGCCTCAATTTAGTGCGTCTGTCTGTTCCCTGCGTCTGTAACGCCAGTGAGGGCGGCTACATCACGCCCACATGAGCCAGTCATTACAATCATTaattggatggatggattaatacctaaataaataaatgaataaatcaaacaaactaacagatacatacatacatagataaacaagaaaacaaacaaaactaaacaaataaaaggcggGTCAGATTTATGATGTAAATATATGAGTGAATACCCGGCCTGTGTATATTAAACATACGACACGTGTCCGTGTGAAAGGTCACGGACCCCTGCAGGACACGGCCCACCGCCCCCCGAGACCCGGCCTCTCACACCTCCTGGAAGGATGCACAGTTCTTCCTGTTGTTTCCAAGACAGCtgccaattacttaattggtctaattggcTAATTAATTAGCAGACAAGCTTGGCACCTGGAATcaaattaatcttatttttcCCCATCAGCTGTAAAGgactttaaaacaatgtcagtTAAGTGTCTAACTGACAGCGTGATTAGAGTAATGGAGGCAGCGCCTGTCCAGCAGGAGCAGCGCAGGGCTGAACAATGGTCCGACAGGCAACCCGCTGAATCAGGTAGTCAAGACACGGTGCTGCTGTACAGGGGAGTGCCAGCTGCGCGAATGCCAACCTCCCCGCAAGGCTGCCGCCCAGCGTTGTTGACATGTCAGATCTGGCACTGACAGGGCACAGACCAGACACTGGGCACAAACCAGAAACTGGACACTGACAGGGCACAGACCAGACACTGGGCACAAACCAGAAACTGGACACTGACAGGGCACAGACCAGACACTGGGCACAGACAGGTCACACACCAGACACTGGGTACAGCTGGCACAAACCAGACACTGGACACACACCAGACACTCAGGAGATTGAGCTCACTGTGTCAAACCCGCAGCAGATTAACACAGAGGGGCGCTGTGCTGCCACACAGTTATGCCGGACCTGCTGGCTCAGGGGTGTCGATGCCAGGGCGTTCCCTGGCGCCATCAAACTCATCATTCAAAGTCCCTGAATCCATCCCTCTATGCACTAGATCTCTCTGTATGTGCAGGTATGTACTGAGGGAGGCGCAGCAGCGCGGTGTGTGTCCCGCGGGGGCCCGGCACTGATCCGGCGCTGATCTGGCACTGATGTGGCACAAGGGCGTCACAAAGGGAGAGGGCAGATCCTCCTACCAGGCCAAGTTACAGATTCTCCTCCTGGTTCAGGAAGGATGGGTAACTCCGGAGCCCATTAGGGCCCTTTCTGCTCGGTATAAACGGGAGCATcagcacattttacattactgAGGGGAGAGTTAACCCGTGAGCTGCTGGCTGGTATTCGTGCTCCCTGCGCAGACTGCCTGGATCAGCGTTTTTCCCCATATATAATTACAGGCTGCTATCCATCATATCAGGGAGAGTGCTTTTGTGGCACACCAAAAATTACAGACTAAGCACTTTCACTAATAGAATAAATATTAATCTCTCTTCTTTTATATATTCTCATTTCAGCtggtatatttaaatgtaccctGACAAGTGTGGGAATGCAcagaaagaggaggagaggaagcgAGGGAGAGAAAGACTAAGGAAaccatgaaaacacacaaacaacatgTGGCTGTCGCTGGTCTCCGGCGCAGGGCGAGTGACCGAGCGCGGAGCCGCGTGTGGGAACAGAGCGGATCAAACGCCCCGAGCTGCGCCCGCCTCGTCCACAGGGGTTTCAGGGTATTTACAGCCCCACAAGGGACACCCGAGCTCAGTTAGCCACGTTGCTCTCTGATTGGTCTAATGAACCGATAAGTCGGACGCTCTGTGGCGACGCAGTCCCAAGCGCAGCTACGCACATCCACTGCTCAGCCGGGACAAGAACATGTGATCAGGGTGACTGACGCTGAACACAGTGACTTGACTGAGTGACAGCTGCTGTGGGAACCAATCACAGACAGCACTGTCCCCCCCCCGGGACCGGAgtctgacacagacagacacacacacactctctctcttacaaacacaaacacacacacactcttacatacacactcacccacacacacagacagacacactcacacacacagtcttacatacacacacagacagacacacacacactctcatacaaacacacacacacacactcttacaaacacacacacacactcacacatacacacacgttactcttacaaacacacacacacacacactcttacaaacacacacagacacactctctacaaacacacactctcttataaacacacacacactcttacaaacacacatacagacacactctcttacaaacacacacacagacacacactctctcttacaaacacacacacacactcttacaaacacacacacacacacacagacactctctcttacaaacagacacacacactgctgtcctGTCCTAAATCACACCCCAGCTGCGTCCTCCACAGTGCCACCAGAGCACACTTCTCTCTTGTCtgacagtgtgtgtggtgtggggCGTGACTCTCAGGGTGAGTACCTGTCACcccagacagacatggaggcaCATTTTAGATTATTGTCCCTGAAGGAGTACCGATACGACCCGCTGGGCCTGTGAAACGGGGCGGCGGGCGATACCTTCTCTCCCAGCGGGCAGTACCCCCTGACGAAGTCCTGGCACACGGCGGCCTTGCGGGACACGTAGACGTGGCTGTAGGGGCAGCTACTGTTGTTGCAGATTCCCTTCAGGAAGTACGAGCAGACGGGCATCTGGGAGAGAAACAGAgcggcagagagagagggtcagaggaCAGGAGAGGGACACGGAGACAGACCAGAGAGccactgactgtgtgtgtgtgtcagtgtgtgtgtgtcattgtgcgtgtgtcagtgtgtgtgtgcatatgtgtctgtgtgtgtgtcagtgtgtgtgtgtgacagtgtgtgcgcgagtgtgtatgtgtgtcagtgtgtgactgtgtgtatgcatgtgtgtctgtgtgcgtgtgtgtgtgtcagtgtgtgtgtgtccgtgtgtgtgcgtgtgtgtcagtgtgtgtgacagtgtgtgcgtgtgtgtttgtgtgtgtgtgtcagtgcctctTTGAGTGAGAGCCGGCTGTGGACGCAGGGTCACAGATAAGACCTGCTCTCTGCATATTAAGTCGAGGTCTCAGTCTCTCCAGCATCGCTCTGTGCTAATTAAGAACATAATTACATTGGTAATTGGATTTCCCCAGTGCAGCGCTGCTCGTTAGcttgtttgattgtgtttttgttatatacatctgtgtacatatattatacacacacacattatatatgtgGACAGGGTAGGGTGGGCACCCAGCTGGAATATCATATGAACCCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38518 lncRNA downstream 101045 712712 ~ 733413 (-) True G30784
TU38517 lncRNA downstream 101045 727940 ~ 733413 (-) False G30784
TU38488 lncRNA downstream 310462 522119 ~ 523996 (-) True G30760
TU38452 lncRNA downstream 379694 453128 ~ 454764 (-) False AMCG00018992
TU38291 lncRNA downstream 420176 413888 ~ 414282 (-) True G30612
TU38546 lncRNA upstream 48540 887649 ~ 894190 (-) True G30809
TU38565 lncRNA upstream 211976 1051085 ~ 1053885 (-) True G30823
TU38634 lncRNA upstream 387721 1226830 ~ 1232565 (-) True G30871
TU38644 lncRNA upstream 417571 1256680 ~ 1256976 (-) False AMCG00019031
TU38669 lncRNA upstream 518199 1357308 ~ 1358163 (-) True G30900
AMCG00019014 mRNA downstream 96766 728065 ~ 737692 (-) True AMCG00019014
AMCG00019015 mRNA downstream 110792 712870 ~ 723666 (-) True AMCG00019015
AMCG00019010 mRNA downstream 164071 669383 ~ 670387 (-) True AMCG00019010
AMCG00019007 mRNA downstream 200592 614398 ~ 633866 (-) True AMCG00019007
AMCG00019006 mRNA downstream 224811 594775 ~ 609647 (-) True AMCG00019006
AMCG00019018 mRNA upstream 145436 984545 ~ 992405 (-) True AMCG00019018
AMCG00019019 mRNA upstream 163484 1002593 ~ 1012013 (-) True AMCG00019019
AMCG00019025 mRNA upstream 255731 1094840 ~ 1095844 (-) True AMCG00019025
AMCG00019023 mRNA upstream 276475 1115584 ~ 1133886 (-) True AMCG00019023
AMCG00019026 mRNA upstream 299112 1138221 ~ 1158854 (-) True AMCG00019026
TU38514 other downstream 200165 631692 ~ 634293 (-) False AMCG00019007
TU38506 other downstream 212383 619039 ~ 622075 (-) False AMCG00019007
TU38444 other downstream 334269 498732 ~ 500189 (-) True G30729
TU38469 other downstream 357382 475536 ~ 477076 (-) False AMCG00018991
TU38468 other downstream 359226 473571 ~ 475232 (-) False AMCG00018991
TU38607 other upstream 335415 1174524 ~ 1174983 (-) True G30849
TU38606 other upstream 335427 1174536 ~ 1174983 (-) False G30849
TU38605 other upstream 335980 1175089 ~ 1177566 (-) False AMCG00019024
TU38658 other upstream 482505 1321614 ~ 1323033 (-) False AMCG00019034
TU38662 other upstream 482505 1321614 ~ 1323596 (-) True AMCG00019034

Expression Profile