RNA id: TU38641


Basic Information

Item Value
RNA id TU38641
length 208
lncRNA type inter_gene
GC content 0.73
exon number 1
gene id G30878
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1256440 ~ 1256647 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGTCTGCACCGACAGGCTCTTCTCCAGCAGCACCTGCGGGAAGCCCAGCCTCTCGAAGGTGCTCCGCTTCCAGTGCCGTCCGTCCTGCTGGGCGAGCGCCTCGTCCTCACTGAACGCCCGCACCACCGGCccgggcaggggcaggggcaccGCGCCGTCGCTCTCGTACCCGTCCTTGGTGCCGCCCGGTGCCGACTGGCCCGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38637 lncRNA upstream 17730 1237876 ~ 1238710 (+) True G30874
TU38631 lncRNA upstream 27999 1226829 ~ 1228441 (+) True G30869
TU38629 lncRNA upstream 57345 1198590 ~ 1199095 (+) False AMCG00019029
TU38628 lncRNA upstream 60238 1195932 ~ 1196202 (+) True G30866
TU38615 lncRNA upstream 69215 1186397 ~ 1187225 (+) True G30857
TU38650 lncRNA downstream 53459 1310106 ~ 1310381 (+) True G30887
TU38651 lncRNA downstream 61975 1318622 ~ 1319017 (+) True AMCG00019033
TU38675 lncRNA downstream 152824 1409471 ~ 1409958 (+) True G30903
TU38684 lncRNA downstream 159304 1415951 ~ 1416163 (+) True G30910
TU38713 lncRNA downstream 295997 1552644 ~ 1552862 (+) True G30937
AMCG00019030 mRNA upstream 20259 1213676 ~ 1236181 (+) False AMCG00019030
AMCG00019029 mRNA upstream 57459 1197986 ~ 1198981 (+) True AMCG00019029
AMCG00019020 mRNA upstream 72536 1178120 ~ 1183904 (+) True AMCG00019020
AMCG00019021 mRNA upstream 142221 1098229 ~ 1114219 (+) True AMCG00019021
AMCG00019016 mRNA upstream 395043 860483 ~ 861397 (+) True AMCG00019016
AMCG00019033 mRNA downstream 62133 1318780 ~ 1321493 (+) False AMCG00019033
AMCG00019040 mRNA downstream 157963 1414610 ~ 1428982 (+) True AMCG00019040
AMCG00019041 mRNA downstream 297426 1554073 ~ 1557865 (+) True AMCG00019041
AMCG00019042 mRNA downstream 306376 1563023 ~ 1581623 (+) True AMCG00019042
AMCG00019046 mRNA downstream 329178 1585825 ~ 1605545 (+) False AMCG00019046
TU38640 other upstream 2705 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 18803 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 255227 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 699536 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 857768 395501 ~ 398672 (+) True G30589
TU38794 other downstream 605182 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 885183 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 887274 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1837831 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1947140 3203787 ~ 3210683 (+) False AMCG00019100