RNA id: TU38675


Basic Information

Item Value
RNA id TU38675
length 305
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G30903
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1409471 ~ 1409958 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatattgctgtgtcttctgctctctgtccactgtggtgTCATATTCATAttgctgtgtcttctgctctctgtccactgtggtgacatattaatattgctgtgtcttctgctctctgtccactgtggtgacatattaatattgctgtgtcttctgctctctgtccactgtggtgtcatattaatattgctgtgtcttctgctctgtccactgtggtgacatattaatattgctgtgtcttctgctctctgtccactgtgctgacatattaatattgctgtgtcttctgctcactgtccactgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38651 lncRNA upstream 90454 1318622 ~ 1319017 (+) True AMCG00019033
TU38650 lncRNA upstream 99090 1310106 ~ 1310381 (+) True G30887
TU38641 lncRNA upstream 152824 1256440 ~ 1256647 (+) True G30878
TU38637 lncRNA upstream 170761 1237876 ~ 1238710 (+) True G30874
TU38631 lncRNA upstream 181030 1226829 ~ 1228441 (+) True G30869
TU38684 lncRNA downstream 5993 1415951 ~ 1416163 (+) True G30910
TU38713 lncRNA downstream 142686 1552644 ~ 1552862 (+) True G30937
TU38715 lncRNA downstream 171313 1581271 ~ 1581489 (+) True G30939
TU38719 lncRNA downstream 187840 1597798 ~ 1599229 (+) True AMCG00019046
TU38720 lncRNA downstream 187840 1597798 ~ 1599229 (+) False AMCG00019046
AMCG00019033 mRNA upstream 87978 1318780 ~ 1321493 (+) False AMCG00019033
AMCG00019030 mRNA upstream 173290 1213676 ~ 1236181 (+) False AMCG00019030
AMCG00019029 mRNA upstream 210490 1197986 ~ 1198981 (+) True AMCG00019029
AMCG00019020 mRNA upstream 225567 1178120 ~ 1183904 (+) True AMCG00019020
AMCG00019021 mRNA upstream 295252 1098229 ~ 1114219 (+) True AMCG00019021
AMCG00019040 mRNA downstream 4652 1414610 ~ 1428982 (+) True AMCG00019040
AMCG00019041 mRNA downstream 144115 1554073 ~ 1557865 (+) True AMCG00019041
AMCG00019042 mRNA downstream 153065 1563023 ~ 1581623 (+) True AMCG00019042
AMCG00019046 mRNA downstream 175867 1585825 ~ 1605545 (+) False AMCG00019046
AMCG00019050 mRNA downstream 218867 1628825 ~ 1641050 (+) True AMCG00019050
TU38640 other upstream 155736 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 171834 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 408258 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 852567 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 1010799 395501 ~ 398672 (+) True G30589
TU38794 other downstream 451871 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 731872 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 733963 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1684520 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1793829 3203787 ~ 3210683 (+) False AMCG00019100

Expression Profile