RNA id: TU38715


Basic Information

Item Value
RNA id TU38715
length 219
lncRNA type intronic
GC content 0.42
exon number 1
gene id G30939
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1581271 ~ 1581489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgaaaagatcaagtcaatacatgcactctctctggttggttccctgacaaattgagttagaaagcagtcatttaccatctcaaccatttctatttctgcttctgtagtccccactgggctttcccagtctatgtttgggaaattgaaatcccccattataacagccacatccttgctacatgcagtcctgattacactgtacaatgcagcatctttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38713 lncRNA upstream 28409 1552644 ~ 1552862 (+) True G30937
TU38684 lncRNA upstream 165108 1415951 ~ 1416163 (+) True G30910
TU38675 lncRNA upstream 171313 1409471 ~ 1409958 (+) True G30903
TU38651 lncRNA upstream 262254 1318622 ~ 1319017 (+) True AMCG00019033
TU38650 lncRNA upstream 270890 1310106 ~ 1310381 (+) True G30887
TU38719 lncRNA downstream 16309 1597798 ~ 1599229 (+) True AMCG00019046
TU38720 lncRNA downstream 16309 1597798 ~ 1599229 (+) False AMCG00019046
TU38721 lncRNA downstream 16309 1597798 ~ 1599229 (+) False AMCG00019046
TU38795 lncRNA downstream 296842 1878331 ~ 1885551 (+) True AMCG00019064
TU38814 lncRNA downstream 356331 1937820 ~ 1938218 (+) True G30996
AMCG00019041 mRNA upstream 23406 1554073 ~ 1557865 (+) True AMCG00019041
AMCG00019040 mRNA upstream 152289 1414610 ~ 1428982 (+) True AMCG00019040
AMCG00019033 mRNA upstream 259778 1318780 ~ 1321493 (+) False AMCG00019033
AMCG00019030 mRNA upstream 345090 1213676 ~ 1236181 (+) False AMCG00019030
AMCG00019029 mRNA upstream 382290 1197986 ~ 1198981 (+) True AMCG00019029
AMCG00019046 mRNA downstream 4336 1585825 ~ 1605545 (+) False AMCG00019046
AMCG00019050 mRNA downstream 47336 1628825 ~ 1641050 (+) True AMCG00019050
AMCG00019052 mRNA downstream 62878 1644367 ~ 1658275 (+) True AMCG00019052
AMCG00019053 mRNA downstream 149406 1730895 ~ 1740826 (+) True AMCG00019053
AMCG00019051 mRNA downstream 164233 1745722 ~ 1758318 (+) True AMCG00019051
TU38640 other upstream 327536 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 343634 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 580058 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 1024367 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 1182599 395501 ~ 398672 (+) True G30589
TU38794 other downstream 280340 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 560341 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 562432 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1512989 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1622298 3203787 ~ 3210683 (+) False AMCG00019100

Expression Profile