RNA id: TU38814


Basic Information

Item Value
RNA id TU38814
length 355
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G30996
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1937820 ~ 1938218 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATACTTTACACTGTTCACCGCGTGCTTAATTAGCCTGCCTTGTGTGTGGCCTCCTCTAGGACAGTCCTGTATTGCTTGGTGGATATCTTCTGTCCCACACTGTGTGATCACGAGTGGTGATGTTATAactcaataaaatgtttttacaaggCCTCTGCTTGCCTCTTGTTTTTACTGCTGTGTCTCCTGAGCTGTACCGCTGACAAACCGCAGTACGTGACAGGTGTAGCTTTCCTGGGGTGACACAGTGGGGTGTGTCAAAGAGTTCAGCTGTGCTGAGGTGAAGTAACACAGTGTGGAGGTCTGTTTTCAGATCTGATACGAGGGCCTCAGGTTAGACACAACTTTcaaac

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38795 lncRNA upstream 52269 1878331 ~ 1885551 (+) True AMCG00019064
TU38719 lncRNA upstream 338591 1597798 ~ 1599229 (+) True AMCG00019046
TU38720 lncRNA upstream 338591 1597798 ~ 1599229 (+) False AMCG00019046
TU38721 lncRNA upstream 338591 1597798 ~ 1599229 (+) False AMCG00019046
TU38715 lncRNA upstream 356331 1581271 ~ 1581489 (+) True G30939
TU38724 lncRNA downstream 100429 2038647 ~ 2083269 (+) True G30943
TU38952 lncRNA downstream 158963 2097181 ~ 2099152 (+) True G31104
TU38970 lncRNA downstream 238930 2177148 ~ 2177356 (+) True G31117
TU38999 lncRNA downstream 250750 2188968 ~ 2209189 (+) True G31141
TU39001 lncRNA downstream 253203 2191421 ~ 2192208 (+) True G31143
AMCG00019064 mRNA upstream 52582 1862316 ~ 1885238 (+) False AMCG00019064
AMCG00019056 mRNA upstream 85451 1842788 ~ 1852369 (+) True AMCG00019056
AMCG00019057 mRNA upstream 106543 1783777 ~ 1831277 (+) True AMCG00019057
AMCG00019054 mRNA upstream 175724 1761674 ~ 1762096 (+) True AMCG00019054
AMCG00019051 mRNA upstream 179502 1745722 ~ 1758318 (+) True AMCG00019051
AMCG00019060 mRNA downstream 37372 1975590 ~ 1980497 (+) True AMCG00019060
AMCG00019063 mRNA downstream 78928 2017146 ~ 2030576 (+) True AMCG00019063
AMCG00019062 mRNA downstream 93036 2031254 ~ 2034414 (+) True AMCG00019062
AMCG00019061 mRNA downstream 123499 2061717 ~ 2062756 (+) True AMCG00019061
AMCG00019068 mRNA downstream 231858 2170076 ~ 2174807 (+) True AMCG00019068
TU38794 other upstream 66441 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 684085 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 700183 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 936607 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 1380916 554766 ~ 556904 (+) False AMCG00018999
TU38962 other downstream 203612 2141830 ~ 2147563 (+) False G31110
TU38960 other downstream 205703 2143921 ~ 2147563 (+) True G31110
TU39281 other downstream 1156260 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1265569 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 1265569 3203787 ~ 3210683 (+) False AMCG00019100

Expression Profile