RNA id: TU38891


Basic Information

Item Value
RNA id TU38891
length 2033
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G31064
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1849538 ~ 1851593 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCTTTAAATCATGTATTAAAATGAACGTTTGTGTTCTGCagttcatttgtttaatgtttcacACTCCTCTCCCAGGAGGTAGATACAGAGCTGTGCGCAGACAGGGCAGTGACTGATCCGCTCACTATACCACACTcgtacagcaacaacaacagtcatcatcatattaatcatcacaataataaatCTTTACAGGCTGCTGGTTATTCCAAACCGTTAtgtgcaacagaaaaaaaaaacattagagaaggaaataaaaataaatattacagtttGAGGTACAGTACCAAAAGAGTAGTAAAAATAATGGAATCATTGTGAATGCaaggaaataattattaataacaacagtGCATAACATATGTATAATTACTTAgaacaataacaatgataacaataatgataattcCTAGAAGTTTCACAGTATTCTTTCCCCACTAGGATCCTGTTACACATCTTTTTTGCCGGATCTCAGATTTGCCTCAAAACACATCCAATTCACcgacagaaaaacaaagtccTCTGTTCCCCTCGATATGCCCACTGTCAATGCCCCTGTCCTGTGCtgcgttttatttttggtgcagAAGATGTTGGAGGCTTGGGAGGAGGGGGAGCCCACAGACAGGAGAGCCAGGCCCCACACCGGCAGCAGGACAGTGAGGAACACGCCATGGAAGTCCCCTCCAGTCCAGTCGGAGAAGAAGAGACCGACACTGTGCCGTGTATGTGGAGCGCTTCGTGTGCCTGTGTGCGTCTCCGCTCGGCCGGCAGGCATGAGGGTTTTCCTGAGGTGAGGTTGATAgctttttctcttctctgttgTTTTTATCCGTTGTCTGAAAGGATGGATCATGACGTGAGTAACAAGCTCAGGGGGGCGGCTTTTGTTTCAATTGTCCTTCTATTGAGCACTTGAGCAGTACGACCGTGTGCTGCACTTTGCACGACTGGAGACAACCAGGACCCAGAGGGGACAGCACACAGCCGGCTACTGTTTGGAGGTCTTCACCGCAGGCTGCCGTGAGTGCAGAGAGGACTCGGAGTCGGCCGTGTGCGTCCAATCACAATCACTCTCATCGGATACCATACCACATCAGTGCCTTCCTTCCCCAAGTCATAGACCCCACAATCCCCATCCCTCCTCCCACAGCGGGCAGACCTTCACATCCTCCTGTTCTGTGCCTCTGGCAGACGCTGAAGTCACCCCCCCTTGGCCGAGCCCCATGTCCCAGTCAGTTCTGCGGGGGCGCCGGGAGGCTGAGGCCCTGCCAGAGGGCGATGgcagcaccacacacacacacaNNNNNNNNNNcacacacacacacacaggccaagTGTGGGCCTCTGATATCAGTCACAccctccacccccacacaccagtgggcaggagagagagagagagaggagctctgtgtgtagtgtttgtgtACAACTCCCTCTTTGTCAGTTTAATAGATCCCATTTAACAacacaccccccacctccctctctgAGGAACACCTGCTGTCTGTGGAAtgattttctttcctctctctctctcccactgcaCTTGTGTTTCACATcattatgtaaaaacaaaccaacaacaacaaacaagagaaacacggggggaggaggagaggccAGGAGGGCGGGGGGCGGGCCGGGGCAGGGCTAGGCCGGCAGCAGAGGCACGCAGCCCACGCCCACGCCACCCTCGTGACACACCATGGGCGCCATGAAGGTCCAGCAGTTGGTCTCGCCGTCGTACATCTCCACCGAGTTCAGGTTGGACTGGCCGTCGTAGCCGCCCACCGCATACAGCCGGCCGCAGTTGGCCACCAGGGAGACGCGGCTGCGGCGAGTGTTCATGGCCACCACATGGCTCCACTGGTCGGCGATGGAGCTGTACACCTCCACCCCGCTCAGGAAGCCCGAGCCGTCGTAGCCCCCGGCCACGTACAGCCTGCTGCCCAGGGCTGCGGCACCGTGCCGACAGCGCTTGTTCATCATGGCTGCCACTGGGTGCCAGGTGGCCGTGTGATGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38864 lncRNA downstream 115951 1732585 ~ 1733587 (-) True G31038
TU38860 lncRNA downstream 140788 1705899 ~ 1708750 (-) True G31035
TU38839 lncRNA downstream 258817 1589579 ~ 1590721 (-) True G31018
TU38707 lncRNA downstream 343621 1505564 ~ 1505917 (-) True G30932
TU38669 lncRNA downstream 491375 1357308 ~ 1358163 (-) True G30900
TU38907 lncRNA upstream 18778 1870371 ~ 1881183 (-) True G31074
TU38909 lncRNA upstream 21152 1872745 ~ 1874348 (-) True G31075
TU38916 lncRNA upstream 34080 1885673 ~ 1896432 (-) False AMCG00019059
TU38918 lncRNA upstream 34080 1885673 ~ 1896432 (-) False AMCG00019059
TU38926 lncRNA upstream 80748 1932341 ~ 1933414 (-) False G31082
AMCG00019058 mRNA downstream 8052 1833471 ~ 1841486 (-) True AMCG00019058
AMCG00019055 mRNA downstream 148988 1685165 ~ 1700550 (-) True AMCG00019055
AMCG00019047 mRNA downstream 221416 1624468 ~ 1628122 (-) True AMCG00019047
AMCG00019048 mRNA downstream 231847 1616748 ~ 1617691 (-) True AMCG00019048
AMCG00019049 mRNA downstream 232837 1608998 ~ 1616701 (-) True AMCG00019049
AMCG00019059 mRNA upstream 30861 1882454 ~ 1885970 (-) True AMCG00019059
AMCG00019067 mRNA upstream 86952 1938545 ~ 1957060 (-) True AMCG00019067
AMCG00019066 mRNA upstream 134512 1986105 ~ 2011157 (-) True AMCG00019066
AMCG00019065 mRNA upstream 168772 2020365 ~ 2030234 (-) True AMCG00019065
AMCG00019070 mRNA upstream 187106 2038699 ~ 2049084 (-) True AMCG00019070
TU38861 other downstream 138995 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 525942 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 526505 1321614 ~ 1323033 (-) False AMCG00019034
TU38605 other downstream 671972 1175089 ~ 1177566 (-) False AMCG00019024
TU38606 other downstream 674555 1174536 ~ 1174983 (-) False G30849
TU38924 other upstream 104075 1955668 ~ 2083271 (-) True G31082
TU38923 other upstream 187054 2038647 ~ 2083271 (-) False G31082
TU38988 other upstream 326387 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 3081245 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11810523 13662116 ~ 13665230 (-) True G33106

Expression Profile