RNA id: TU38909


Basic Information

Item Value
RNA id TU38909
length 1116
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G31075
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1872745 ~ 1874348 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAATGTAGTGTACTGCGCAGGGTCCTCATCGCACACGTGTCATTTCTGGCACAAAAGGCCTTCAACTTGGTGTTGTTCACCGCCACGCAGTCCTGTCTGGAGCACAACACTGTGCTTAGACCTGTTATGCAGAGCATCACTATTGGAAAATAAGCCACTCCGGTGATATGAATATGAGGTTAGCGCCCCAGTGTCTGGGTCGGTCACTCAGTGAGGCAGCAGGTCACGCTAGAGGGTGTTTGGGGTGTGCTCTGCGTTGTGCTGGGTGTTGTGTCTTGTTTAGTCAGTCctctgtgtgctgtggtgtAAGGGAGCAGAACAGCCTTGACAATGAATGCCAgtgatgctttaaaaaaatataaataaatcaggtgAATAACTGTCCCAATAATATAAACCCAGTGCCAGTTCTGGCTTCTGTTCCACCCCGTTCTCAATGACTGAAGTGAGACAATAACTGGCTATATTGGACCGTTTTAAGCACAGTTTCCAGGTTGTGACTGAAGCAGGTGGGGGTGTATAGAGAGTGcctgcagccccccaggaccAGCGCTGCCCACCACTGCTTTACAGTGCGTCTGCACTAGGACTCAATTTCAATTCAACTCAACTcttgtgttctgtttttgttcgCCAAACCAGAGACGACCAACAGCGTTGTGTTCAGCTTGAGTCACTGCACTTGACAGCAGTGAGGAGCAGGCCAGCAGTGTGCAGGAGTGCATGGCCACACTACTGCAGCCGCAGGGACTGTACAGAGAATGTAAATGCGCTGCAGGAAAATCCTTGCTATCTTCTCTGTCTTATTAGGATCTCAGTGCCTCTCCtctttgctttggttttgaCAGGTTGATACATGTTATGGTTGTACAATTCTCTTGGAAGGCAACTCCAGCCAACCCAAAGAAGTGTGGAAGAGATTGGTGCAGAAATTGAAGATTGTCACTGACCCacagAATCGCACCAATCAGTCAGAGCCGTGTTCGAGCAGCGGAGGGAACGGCACCCGGGCCTGTGAACTGCAGAGACTCAATGGAACCGGACTCAATGAGACGGACCCACAGGTACCGAGACACGCCGACAGGGTGCCAACAACGAAATCAGTCAGATTAAAT

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38891 lncRNA downstream 21152 1849538 ~ 1851593 (-) True G31064
TU38864 lncRNA downstream 139158 1732585 ~ 1733587 (-) True G31038
TU38860 lncRNA downstream 163995 1705899 ~ 1708750 (-) True G31035
TU38839 lncRNA downstream 282024 1589579 ~ 1590721 (-) True G31018
TU38707 lncRNA downstream 366828 1505564 ~ 1505917 (-) True G30932
TU38916 lncRNA upstream 11325 1885673 ~ 1896432 (-) False AMCG00019059
TU38918 lncRNA upstream 11325 1885673 ~ 1896432 (-) False AMCG00019059
TU38926 lncRNA upstream 57993 1932341 ~ 1933414 (-) False G31082
TU38845 lncRNA upstream 101356 1975704 ~ 2061961 (-) True G31021
TU38995 lncRNA upstream 301814 2176162 ~ 2176966 (-) True G31137
AMCG00019058 mRNA downstream 31259 1833471 ~ 1841486 (-) True AMCG00019058
AMCG00019055 mRNA downstream 172195 1685165 ~ 1700550 (-) True AMCG00019055
AMCG00019047 mRNA downstream 244623 1624468 ~ 1628122 (-) True AMCG00019047
AMCG00019048 mRNA downstream 255054 1616748 ~ 1617691 (-) True AMCG00019048
AMCG00019049 mRNA downstream 256044 1608998 ~ 1616701 (-) True AMCG00019049
AMCG00019059 mRNA upstream 8106 1882454 ~ 1885970 (-) True AMCG00019059
AMCG00019067 mRNA upstream 64197 1938545 ~ 1957060 (-) True AMCG00019067
AMCG00019066 mRNA upstream 111757 1986105 ~ 2011157 (-) True AMCG00019066
AMCG00019065 mRNA upstream 146017 2020365 ~ 2030234 (-) True AMCG00019065
AMCG00019070 mRNA upstream 164351 2038699 ~ 2049084 (-) True AMCG00019070
TU38861 other downstream 162202 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 549149 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 549712 1321614 ~ 1323033 (-) False AMCG00019034
TU38605 other downstream 695179 1175089 ~ 1177566 (-) False AMCG00019024
TU38606 other downstream 697762 1174536 ~ 1174983 (-) False G30849
TU38924 other upstream 81320 1955668 ~ 2083271 (-) True G31082
TU38923 other upstream 164299 2038647 ~ 2083271 (-) False G31082
TU38988 other upstream 303632 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 3058490 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11787768 13662116 ~ 13665230 (-) True G33106

Expression Profile