RNA id: TU38923


Basic Information

Item Value
RNA id TU38923
length 482
RNA type TUCP
GC content 0.56
exon number 2
gene id G31082
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1932341 ~ 2083271 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtctgtgtgctgtttgctgttctccccatGGCCTGACCCGACGCCAGGCTGTTGAGTGTGAGGAACGTGACTCTTCTCATGATGGTCAGTTGGCCTATAGACGCCTGTAGGAGAAGAGCCTGCTGTGTAACTGCTGAAGTGAATTAGCAGCCCAGCGGCCGCAACGCACTGCTGTAAAGCTCTGTATGTGTTTAATGTCTCTGTCTGCAGACGCTGGGGTGCCATATGTGGTCAATGCCACAGTAACAGGACAGATAGGAGGGGAGGTCAGTGTCCAGTGTCACTATGGACACCCATACCGGTCCAGACAGAAACAGTGGTGCAGGAGTGGAGACTGGAGCTCCTGTCAGACAGCAGGAAGCCCTGGGACTGCAGGACACGGCTCTGTCCTGATCACTGACCACACAGCGGAGGGACTCTTCAGTGTGACTGTGAGCGGACTGCGGCCGGAGGACCAAGGCTGGTACTGGTGTGATATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38926 lncRNA downstream 105233 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 142215 1885673 ~ 1896432 (-) False AMCG00019059
TU38918 lncRNA downstream 142215 1885673 ~ 1896432 (-) False AMCG00019059
TU38907 lncRNA downstream 157464 1870371 ~ 1881183 (-) True G31074
TU38995 lncRNA upstream 92891 2176162 ~ 2176966 (-) True G31137
TU39093 lncRNA upstream 321143 2404414 ~ 2409880 (-) True G31218
TU39114 lncRNA upstream 391413 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 396667 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 410566 2493837 ~ 2494055 (-) True G31244
AMCG00019065 mRNA downstream 8413 2020365 ~ 2030234 (-) True AMCG00019065
AMCG00019066 mRNA downstream 27490 1986105 ~ 2011157 (-) True AMCG00019066
AMCG00019067 mRNA downstream 81587 1938545 ~ 1957060 (-) True AMCG00019067
AMCG00019059 mRNA downstream 152677 1882454 ~ 1885970 (-) True AMCG00019059
AMCG00019058 mRNA downstream 197161 1833471 ~ 1841486 (-) True AMCG00019058
AMCG00019069 mRNA upstream 13713 2096984 ~ 2098809 (-) True AMCG00019069
AMCG00019071 mRNA upstream 57250 2140521 ~ 2141953 (-) True AMCG00019071
AMCG00019074 mRNA upstream 108125 2191396 ~ 2203852 (-) True AMCG00019074
AMCG00019073 mRNA upstream 125519 2208790 ~ 2234517 (-) True AMCG00019073
AMCG00019078 mRNA upstream 208229 2291500 ~ 2298668 (-) True AMCG00019078
TU38861 other downstream 328104 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 715051 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 715614 1321614 ~ 1323033 (-) False AMCG00019034
TU38605 other downstream 861081 1175089 ~ 1177566 (-) False AMCG00019024
TU38606 other downstream 863664 1174536 ~ 1174983 (-) False G30849
TU38988 other upstream 94709 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 2849567 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11578845 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12408620 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12408620 14491891 ~ 14558290 (-) False G33163

Expression Profile