RNA id: TU38924


Basic Information

Item Value
RNA id TU38924
length 2162
RNA type TUCP
GC content 0.43
exon number 2
gene id G31082
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1932341 ~ 2083271 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtctgtgtgctgtttgctgttctccccatGGCCTGACCCGACGCCAGGCTGTTGAGTGTGAGGAACGTGACTCTTCTCATGATGGTCAGTTGGCCTATAGACGCCTGTAGGAGAAGAGCCTGCTGTGTAACTGCTGAAGTGAATTAGCAGCCCAGCGGCCGCAACGCACTGCTGTAAAGCTCTGTATGTGTTTAATGTCTCTGTCTGCAGACGCTGGGGTGCCATATGTGGTCAATGCCACAGTAACAGGACAGATAGGAGGGGAGGTCAGTGTCCAGTGTCGATATGGACACCCATACCGGTCCAGACAGAAACAGAGGTGCAGGAGTGGAGACTGGAGCTCCTGTCAGACAGCAGGAAGCCCTGGGACTGCAGGACACGGCTCTGTCCTGATCACTGACCACACAGCGGAGGGACTCTTCAGTGTGACTGTGAGCGGACTGTGGCCGGAAGACCAAGGCTGGTACTGGTGTGATATAGGGGACCANNNNNCTGAGAGGAGCATCAGTCACCATCCCTTGTCACTATGAGgacaaatacaaaagcaatgcaaaatacTGGTGCTCTGGAAATTCCAGGACAAACTGTGAATCTTTAAAAAGGACTGTCTCTCCAATCATAGAGAGTGATAAAGTGTCCATCCCAGGTGATGATCCAGCCCAGGGAGTTTTCACTGTGCCCATGAGGGGACTGGAGACGGGGGACTCAGGGGTGTACTCGCGGTCATTCCTTGCCAGTACGGCCCAGATCTCAGAGACCATGTGAAAATGTGGTGTGAAAAATGGGAAAGGAGCGACTGCAGGAATCTGGGGAGTGGGGATGACAGAGTGTCAGTGACAGATGACAGAGCTGGGGTGTTTACAGTGACCATGAAGAAGCTGAGCCATGAAGACCAAGGCTGGTACCGGTGTGCCACAGACACGAAGACTGTCCCCCTGTACCTGAAAGTGCTGGAGGGTAAGACATCTCTCTCTTTACATGAGTCCAGTGGCATGAATGCAGGGCCTGTTGTGTGACTGGTGAGAGACCTCAGTCGTCTAGGATGGTGACAGCAGCTCACTCCCTCTTTCCCTAGTTAACTGTGAAATGATTCATTGAgtgtttcaatatatatatataagaatccTCTTATGAACTAGTAGACACACTTTGGCAGCAACAATTTGTACTTAATTACATTGAATGGAGGTAATTACCAGAGAGAGATGTGTTCTCATTAAATCagattggaaaacaaatcaagagaGATTGAACTTGGCAGATATGTGGAAGACCACGGTTACCAGAACACTTACGCACAGGTAAATCGTTCTATATcaataaatggagaaaagtcTATTAAGATTATTAGAGCTGTGAGAATCTTTCACACGAGAATGAAGGAacttcattataaaataatagtttcacatttgtgaaaaagtcaaatgttttattttagaaggATTTTTACCTCTGTATGTGTGCAGGATGTTGTCTAGCATTAATATATGATGCATGTGATCTTTAAGTACGCCATCCACGGTCACTCATGCATTGAATAATGCAGACATAGATGTGAACATTAGAGTGTGCAAGTAAGGATCCCTGGTAGAAATACAATCTACAAGATCCTACAAGATTCTACAAGATCCTTAAGGATCCCCATAGGATCCTGTTCAGGAATGGGATCCTGGTCAAAATCTTGGGTACAACCCTGTGAGGAATATGATTTTATACCAATCATATTGTTTATGAACTTTATCTGGATTTTAGATATTTCAGGAGCACACAAAATTGGATTGTTCAGGTTTGTTAACACAAGGCACATGTATGGCACCTTGTATTCAAAGGCATACAGGTCACATGTTCAATGCgaacaatacaaaatgatacTCTCAAGCAAAGTGCCATATGTGTCTAAGTAGTTTGATCCTATGAGGCACCATTTTCACATCTTATCCAAAAACTATCGTCAAATGTTGCATTGAATCggtctttatttacattttgatgaaggtaattatttttttttaaataaaagtatgtgGATTTAAAGtatgattgatttttttaaatgtcattaagctatgtttataaaatatttcGTAATATGTAGGGACTATATCTATCTCCTAGCCTGGTAGGggttctattctattctattctatgaATACACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38926 lncRNA downstream 22254 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 59236 1885673 ~ 1896432 (-) False AMCG00019059
TU38918 lncRNA downstream 59236 1885673 ~ 1896432 (-) False AMCG00019059
TU38907 lncRNA downstream 74485 1870371 ~ 1881183 (-) True G31074
TU38909 lncRNA downstream 81320 1872745 ~ 1874348 (-) True G31075
TU38995 lncRNA upstream 92891 2176162 ~ 2176966 (-) True G31137
TU39093 lncRNA upstream 321143 2404414 ~ 2409880 (-) True G31218
TU39114 lncRNA upstream 391413 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 396667 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 410566 2493837 ~ 2494055 (-) True G31244
AMCG00019059 mRNA downstream 69698 1882454 ~ 1885970 (-) True AMCG00019059
AMCG00019058 mRNA downstream 114182 1833471 ~ 1841486 (-) True AMCG00019058
AMCG00019055 mRNA downstream 255118 1685165 ~ 1700550 (-) True AMCG00019055
AMCG00019047 mRNA downstream 327546 1624468 ~ 1628122 (-) True AMCG00019047
AMCG00019048 mRNA downstream 337977 1616748 ~ 1617691 (-) True AMCG00019048
AMCG00019069 mRNA upstream 13713 2096984 ~ 2098809 (-) True AMCG00019069
AMCG00019071 mRNA upstream 57250 2140521 ~ 2141953 (-) True AMCG00019071
AMCG00019074 mRNA upstream 108125 2191396 ~ 2203852 (-) True AMCG00019074
AMCG00019073 mRNA upstream 125519 2208790 ~ 2234517 (-) True AMCG00019073
AMCG00019078 mRNA upstream 208229 2291500 ~ 2298668 (-) True AMCG00019078
TU38861 other downstream 245125 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 632072 1321614 ~ 1323596 (-) True AMCG00019034
TU38658 other downstream 632635 1321614 ~ 1323033 (-) False AMCG00019034
TU38605 other downstream 778102 1175089 ~ 1177566 (-) False AMCG00019024
TU38607 other downstream 780685 1174524 ~ 1174983 (-) True G30849
TU38988 other upstream 94709 2177980 ~ 2178650 (-) True G31130
TU39603 other upstream 2849567 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11578845 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12408620 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12408620 14491891 ~ 14558290 (-) False G33163

Expression Profile