RNA id: TU38960



Basic Information


Item Value
RNA id TU38960
length 842
RNA type TUCP
GC content 0.49
exon number 2
gene id G31110
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2141830 ~ 2147563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGGAGTATCTGGGGGGAGTTACTGTTCTGCAGGCTGGAGGGAGCTGAGGGGCCACAGAGCCCAGTCCTCAGATCTGCTGCTCCCCCAGCGCTGAGAGGAAGATGAACCAACTGCTGCCTGTGCTGCTGCTCACTGCAGGGGCCCTGCTGGCCCCCACCGAGGGGCAGGAAGAGTACGACAAACTGCCTGATGATTTCAAGATAGGAGTCGATTGGGCCCTTGAAACGTTCAATTCCCAAATGAACAATAAACTGCTTTACCTTTTCTTCAAAAGCCAGACCAGGTCGGAAAAAGAGGAGATGAAGGACAGTCGACATCAGCACTGTGAGGAGACTAAGAAGGACTACAGTCCAGGTCAGTTGGTCAGTCTTGCATCAACTGGCCTTCATAGCTCCTAGGGAAGAGGTGGTGGAGGGGGGCGAAACAAGAGGGCACAGAGAATCCCCAGACTTCCCCCCCATCAGTCTGAAGTGGCAGAAGATGGCACCTGAGAGCATTGCTGCTGTCTGTGCTGGGACCCCAGGGGGGATTGTTCTCCATCTTCATGATATGTGTTTCAAGATAAGAACAGTCAGGAGacgtgctgctgtgtgtgtctgtctctgtgtcgcTCTGCCGTGGCTGTGTGACGCCCACTATGGCCAAAAAAGCATCTCTCTGTGCTGTTCAGCTGTGATTCATAGTGTATATTCATGATGATATATCTGATATTGTATGCTGTCATTATAGAGACACTGTGATAATGTTACCCTGTAATATATgcaacaattacaataaagatTCACAACAATGCCAcactgtaataaatgtaattattactaTATACTGTCACTATGACGTT

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU38952 lncRNA upstream 44769 2097181 ~ 2099152 (+) True G31104
TU38724 lncRNA upstream 60652 2038647 ~ 2083269 (+) True G30943
TU38814 lncRNA upstream 205703 1937820 ~ 1938218 (+) True G30996
TU38795 lncRNA upstream 258370 1878331 ~ 1885551 (+) True AMCG00019064
TU38721 lncRNA upstream 544692 1597798 ~ 1599229 (+) False AMCG00019046
TU38970 lncRNA downstream 29585 2177148 ~ 2177356 (+) True G31117
TU38999 lncRNA downstream 41405 2188968 ~ 2209189 (+) True G31141
TU39001 lncRNA downstream 43858 2191421 ~ 2192208 (+) True G31143
TU39092 lncRNA downstream 256563 2404126 ~ 2409887 (+) True G31217
TU39148 lncRNA downstream 417946 2565509 ~ 2566978 (+) False AMCG00019089
AMCG00019061 mRNA upstream 81165 2061717 ~ 2062756 (+) True AMCG00019061
AMCG00019062 mRNA upstream 109507 2031254 ~ 2034414 (+) True AMCG00019062
AMCG00019063 mRNA upstream 113345 2017146 ~ 2030576 (+) True AMCG00019063
AMCG00019060 mRNA upstream 163424 1975590 ~ 1980497 (+) True AMCG00019060
AMCG00019064 mRNA upstream 258683 1862316 ~ 1885238 (+) False AMCG00019064
AMCG00019068 mRNA downstream 22513 2170076 ~ 2174807 (+) True AMCG00019068
AMCG00019072 mRNA downstream 30364 2177927 ~ 2188659 (+) True AMCG00019072
AMCG00019075 mRNA downstream 133079 2280642 ~ 2291671 (+) True AMCG00019075
AMCG00019076 mRNA downstream 218043 2365606 ~ 2369242 (+) True AMCG00019076
AMCG00019081 mRNA downstream 228432 2375995 ~ 2378374 (+) True AMCG00019081
TU38794 other upstream 272542 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 890186 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 906284 1233494 ~ 1237637 (+) True AMCG00019030
TU38402 other upstream 1142708 995327 ~ 1001213 (+) True G30698
TU38342 other upstream 1587017 554766 ~ 556904 (+) False AMCG00018999
TU39281 other downstream 946915 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 1056224 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 1056224 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 5272938 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 6197892 8345455 ~ 8384592 (+) False G32130

Expression Profile