RNA id: TU39092


Basic Information

Item Value
RNA id TU39092
length 5762
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G31217
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2404126 ~ 2409887 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCACCAACtaacactggaaaaaaaaaaaaagaaagaaagtgagcTGGTCTCTTAAGTCAGTGGAGGGAGACTGGATCTCGGTTTACCTGAAAGAATGGAGGTGGAGGTTCACCCATTCTCTCTCAATATAGATCGGTGGTAGCCATGCTTTTCTTTACTGCAATGAACCCCCCCCAGAAAAAGCAGTCACCACACTTGTAAACAGTGTCTAAATCCCACAGCGCGAGGCCCGGACAATAATGGAGCAACACAGGAGTCTAGaaaggattttattatttttattactctTTACAACCAGCAGGACGCTCTCAGTTATGGATCACCTGTACAACTTGTAGGGGGGGAACCCCaacccaaaaacaaacaaaaaaaacacactttcctGCAAGATTTAGAAAAGGATTAGTTTGACGTCTTAATACTGATTGGAACGGGGGTCTGGCTCCAGCCCTCACCAGCCACATCTTCTTCACGGCGTAACTGAGCCCATTTAGTGCGGCAGGAGAAGCGCGGCTCTCTGCGATGTGAATCTACAGTACAGAGAAGTACACGACACGCCAAACTGGCGCCCCCGATTCGCATCAGAGCTcagagagaggagaaacagaCGAGCcagcagaacaacaacaaccaaaaaaaagctGCGTTAAATTTGCCCGCAGCAcgtttaaatgaataaatatatccGTCCAGATGTGGGGATGGAAAGCCAATCCCAGAAGACTGTGGTTCTCAGGCACTGGAATCTAAACCCCCGCTAGCttacacatttttttagttttcttttgcctttaattataatttgccacataagttttgtttttgtttgtttgttgtgaaatGCCTCGGAGGGATGCCCTGGATAAAGCTGCTATTCCCAAACTGCGGTGAAGAATGAGGCCTGCAATTACCCTGCCTCCCGGTTCTCACTCCGCCTTCCTTTGCCAACACGGTACGGGCACCATTATGttatcaaaaacataaaaccccAACAACAGATCGTTTTTTTCCTGGACAAGAACAATGTATTATTGCAACAGAACCTGCAAAACACATCGATACACCCCGTGGTGCCAGGAGTCAGTGGAGAGACggctgcttgtgtgtgtgggcgTCCGCAGGACCAGAAGGCCAAGTGATTCAACTCTGACtacttcattattatcattataaaaagttaattactCTTCAGAAGAGAAGGATGAGATTTTTGGTTACAGATCGGAAGCCTACATTTTGTTGATTCCATTTCTTTCCACTAATAAACCACATCGAACTGGATTAGTCTCGGGGGCCATATTAAGATCAGGCTAGTTCCTCTTTCTTGTTGGTTTTGGTGTTAGTACACTTCTATGTAAACCcccagctgcagtcaggagagGAGGACcgggggaggagggaggattTAGTGCCCTTCAACACAAAATGGGACACGAGGACAGGATGCaataatgcttttgttttctttccccaaaCCTCCAACCcaaccaaaaaactaaacacagaaAGAGTTACACATAAAAGACACGTACCCTAGAGTGCCTCACAGGTTCAAGCTTTGGCAAACGCTACTGTCATGTACATCCAAGCGGTCTCAGTAAGTCACAGCTGTAACTGtatcttcctctctctccctttccctctgtACACGCCTTCCTAATACACTGAAATCACAACACagttcatatttatatagcgcctttcgcTCTCTTTAATGTAGCCTGGGTGCTGTACATTGATTAGAGCCccaccctcctctctctgtctgtctcacgAGTCCCACAAGGAGCAGGAgttgcagtccagtccagttgcTGGGCAGTGGGGGGATCCTGCACTTTTTCGGCACCCCCATGCAGACAATAATACGCACAGACTGCTGTTCAGCTGCCTGTCGGGCCGGTTGTCCACGAAAAGGCCACACTCTAGCTCCGCCTCCGTGTCTGACGtgatctgtgcttttttttagaaaacaaacgTAGCAACTCCAGGGATGAGTCTGTAGCACAGGAGCCGTAAACCCGCGGGTCAGACAGAGCCTCGGCTGGCTATTGGCACCACAGCACgtgccccctctccctcccatcACATTACAAGCTGACTTTTGGGAAAGTAGAGTCCTGGCTGGCCCTCGGTCTTTGCTGGGGGTGTCTCAGCTGAAGACTCTCGTCCTTATTCACCCTCTCATCAGCACAGACAGAGCTTTCGGCTCTCGAGTCGGAGAGGGGGTGGGCGTCTGTCCCGCGGGGCTGTGAGAGAGATTACTGCCCTCCTGTGGATCTTGCTTCATGTCAAAAACaagataattgtattattcttttccTTCAAAACGTGTCCATGCGGCATGCATAGGTTGCAAAAATCaaaccaagaaagaaaaaaaaaaaaaaatccctttgcCAGCTGGGCGTCTCATGTCAAAGTAGCGTTTTCaacgttttttatttattattattattattattttagaacacAATTTGTACGTCTCTAAGTGGACACCGCTATGTGATGACATGGTGGACAAGCACGCACACAGGGACTACGAAGTACAATCAGACGCCAGCAACGCCGGGCTGCCGCTGCGCAGACACTGTGTGATTAAGGCtcacatttcagaaaaacaaaacagaaaaacaaaacacaccaaaacCAAACCGGGCAGAGTCGCTCACACGTGGCCACTGGGCCGCTTCAGAGATGGGGAACAGTGCCAGAGGGACCCGCTATCTCAGCACAGAAGGGTAGTCACTGCTCACCGTGAGTCACACTTTCTTAAGTCAGTGCGGCCTTCGTTCTCCCAGGGGGGGCTCCAACTTTGGCCTGATGCCGTGGCCCACCGCTGCCACCGCCACAGAGAAACATAAAAGAGAAACGCCCAGAACAAAGCGCCACTGCTTCCTGACCCCCCCAGTGAAAGGGTGGCAGAACCCTCTCATTTCTGTCAAAGAACAACAAGAGAAACAAActccaaagcatttttttccttcattttccaTCACAGTACAATCATCAGATCAAGTGGCTGATTGAGAAATTATcagttgttttttctattaACGCCCAAGGCTGGGGATCCTAACAGGCTTGCAGAGGCTTCATTCCCCACAATCCCCCATTCTCAGTGGCGGCCCGTCTCCCTGCACACCGGGGCGACTGCAGACCGTCCAGTTACTGAACAAGCAGCGTTCTGGAGGCAGTTTAGCAAAactctcttccctctcttttAGCGACTCACATATACAGTTGAGCTGATTTGACAGGGTCAGCAAACTGACTGTACGTGATTCTAAGTTACCAAACTCTTTTTGCTACACATTTCTgctacatttctttctttctctttagtGCACTTGGTCATGCTTGTGGTTAAAGACAGTAGATTGAAACGATTGAGCACGATTGCTCATTTGCCCGGGGCTGTCTGGCAGTCGAGAGTGTGCCGTGGATTGCCAGCATTCCCCTCGAATACAGCCAGAGCCACAGCACAACTTCATGATGCGGTGGGTGACAGTGGAGTAATAATACCCCCCAGTGATAGTGCTGCACTCAGGGGACTTTGTGCAAGATGGACAAGGATgactttttaatacattaaagagTGAATTTGGCTGTGGTGCACAATACGTTTGGCATGGAAACAGCTTCTAAAAGCCCATGACACACCGAGCAACCTCTCCCACTGGACTGGCCAGCTCAGTGACAGCCTTCAGCTTTACTGCTCAGAACCTCTCCGCAATGAACCAATCTGTTAATTATCTCACACGGCAGCCTGGGTTACAGCGAACACCGAACGAACACGGCACAGACATACGGACCGTGGGGGGGTGGCGGGGCGGGGAGGCCGACATGTTGTAACACCTATTAAAATACAGCCCGATGCTTCTACCGGAtctagtttttcttttcagtgtgaCAGAGTGGAAATGCTTCACTTCTCCACACTGGCTACAAATAATAAGCACACGAAAATAAAAAACCAACGCAAAGATCAGCACATTGTGAATGCTGAGGGTTCAGAGGGATGGGGGTTTTCTCTTGCCCTGAACACCCCAGTGGCAGTGACTCATCGCAGCTTGGTGATGCTGTGGAGAGTGCCCTCACCTACCTCCTGTGTTTATCTGGACAACTGCAGATTATTTTAGTCTGTTATTCTGTTAATTACGTATCCTATAGTCAAGGTACCTTCTGTGTTATAAATACAAGAGGACAAGTTCAGATTTCTATCAGGAATAAAAGCACAGTTTGCCTGTTTGACGAACAGCAGCACCAATGAGCCCTCCAGCTCTCCTACATCCTGCCTGTACGATGGAGCACTAAAAGGGCCGATGCTGTCACTGGCGCCATCTTGTGGCTGGCCAGGGTTTCGGCACCTGCTGCGCTGACTGCACTGCAGAGGGGTGGCTGTGGGGCACTGGGCTGTAGTCAGTTATGATACAGACAAACCTGCACCATCAAACAGGAGTGCAGTGCGAACGCCAGCGGACTGGAGCACAGATCACATGCCTGGAGGAGGAGGTCAGACCCGGCCGTGTCACCACGTCAGAGtgaaaataatcatgtaatGCAGACATTTCCGGAGCAGTGACTCTACGGGGCTGCATTAGAGCCTCTTGCGTTGCCACAGGCGGAGGGGGGCGTAGACGGCGAGCGCATGAGGTCAGAGGCGGGCGGCACGCCAGCGGCAGTCAAACACAGCACTGGCTGTTCTCTTCGGGCCAGGCTTTCCCATAACGCAGCGAGGAATGTGGCACTGCTGTAACCTCAAGGGCCCCATTCACTCAGACTCGCACACACCCGTCAGCTTTAtaatggggggaaaataaatgttttccagaTACTGGCACTCGTTTCTGTTCAGCCTCTCTCTAATGTCTCGAAGCTCCCCCTTGTCTGAACTCACCATGCCCACTGACTCGTACTTTACATCGCCCTGCAAAGCATtgctgtgaaattattttgGGGAGGGCGCTATATATCAGATAAAGATTGATTGATGGATCAATGGACAGAACTATAAACACCTGCTTGCAGTCTTTTCAGTTCCCATGTCCCACTGACGGCGATGGGGAGAGGAGCGGTGGGGGTGCAGTCCCAGAGAGGTGGCTTCtgggagagaggagagctgGCGTTTTTGACAAGGGAGAACCTTATTTGAATGTTTAGTGGTGACCATGTCCAACATGTCGGCAAAGGCAGAGTCAAAGGGGCTCGAGGACGTTGGCCGTGTGTCCTCCGAAGCGCAGGGTCAGTCTGGACACACCGCTGTAAACAACTGGCAGCCCCGCCTGTGAGGAGGCCAGGGAGAAATACCTTCCCCTTCAGTCACAGCTGCGAGATTCTGCTTCCATCGTTCCTGCTGACGTAGGACTACAGGTACCAGCATGCTTTAGGATGTgagttttttaaaaaaatttaacactagtagtaataataagcATGCTTCCTCGTTGGTGAAACTAATGTTATGAGTTCACTGTACAGCATATACAGGGATTGGTCTGGCGTTTCGTGGCCTCTGTGGTCAGGAGGGCTTTGATTTCGAACCCCACACTCGGGCGTGAATCAGTAGGAAGCCGGGGGGGTTTTGTGCTTGCATGCTTCAGATCCAGCCACTCTGCAGGCTGGGAGTGATTCATTATAGCCGTGGTTCGTGATGATGAGAGCTGAAGGTGCTCTCCGCTCCCCGATGAGCAGCAGCCCAGCATGCTGATCTCCAGGGGTGCGACGGGGGGGTGTTGGGATGATGGCGGTCTGGGGNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38999 lncRNA upstream 194937 2188968 ~ 2209189 (+) True G31141
TU39001 lncRNA upstream 211918 2191421 ~ 2192208 (+) True G31143
TU38970 lncRNA upstream 226770 2177148 ~ 2177356 (+) True G31117
TU38952 lncRNA upstream 304974 2097181 ~ 2099152 (+) True G31104
TU38724 lncRNA upstream 320857 2038647 ~ 2083269 (+) True G30943
TU39148 lncRNA downstream 155622 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA downstream 155622 2565509 ~ 2566978 (+) False AMCG00019089
TU39274 lncRNA downstream 667029 3076916 ~ 3077156 (+) True G31351
TU39304 lncRNA downstream 729800 3139687 ~ 3165672 (+) True G31380
TU39362 lncRNA downstream 934868 3344755 ~ 3345244 (+) True G31430
AMCG00019082 mRNA upstream 1997 2391707 ~ 2402129 (+) True AMCG00019082
AMCG00019081 mRNA upstream 25752 2375995 ~ 2378374 (+) True AMCG00019081
AMCG00019076 mRNA upstream 34884 2365606 ~ 2369242 (+) True AMCG00019076
AMCG00019075 mRNA upstream 112455 2280642 ~ 2291671 (+) True AMCG00019075
AMCG00019072 mRNA upstream 215467 2177927 ~ 2188659 (+) True AMCG00019072
AMCG00019083 mRNA downstream 77455 2487342 ~ 2488988 (+) True AMCG00019083
AMCG00019086 mRNA downstream 81611 2491498 ~ 2501639 (+) True AMCG00019086
AMCG00019089 mRNA downstream 110217 2520104 ~ 2618052 (+) True AMCG00019089
AMCG00019090 mRNA downstream 209348 2619235 ~ 2636403 (+) True AMCG00019090
AMCG00019088 mRNA downstream 248666 2658553 ~ 2665864 (+) True AMCG00019088
TU38962 other upstream 256563 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 256563 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 532747 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1150391 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 1166489 1233494 ~ 1237637 (+) True AMCG00019030
TU39281 other downstream 684591 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 793900 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 793900 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 5010614 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5935568 8345455 ~ 8384592 (+) False G32130

Expression Profile