RNA id: TU39093


Basic Information

Item Value
RNA id TU39093
length 5467
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G31218
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2404414 ~ 2409880 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACCGCCATCATCCCAACACCCCCCCGTCGCACCCCTGGAGATCAGCATGCTGGGCTGCTGCTCATCGGGGAGCGGAGAGCACCTTCAGCTCTCATCATCACGAACCACGGCTATAATGAATCACTCCCAGCCTGCAGAGTGGCTGGATCTGAAGCATGCAAGCACAAAACCCCCCCGGCTTCCTACTGATTCACGCCCGAGTGTGGGGTTCGAAATCAAAGCCCTCCTGACCACAGAGGCCACGAAACGCCAGACCAATCCCTGTATATGCTGTACAGTGAACTCATAACATTAGTTTCACCAACGAGGAAGCATgcttattattactactagtgttaaatttttttaaaaaactcACATCCTAAAGCATGCTGGTACCTGTAGTCCTACGTCAGCAGGAACGATGGAAGCAGAATCTCGCAGCTGTGACTGAAGGGGAAGGTATTTCTCCCTGGCCTCCTCACAGGCGGGGCTGCCAGTTGTTTACAGCGGTGTGTCCAGACTGACCCTGCGCTTCGGAGGACACACGGCCAACGTCCTCGAGCCCCTTTGACTCTGCCTTTGCCGACATGTTGGACATGGTCACCACTAAACATTCAAATAAGGTTCTCCCTTGTCAAAAACGCcagctctcctctctcccaGAAGCCACCTCTCTGGGACTGCACCCCCACCGCTCCTCTCCCCATCGCCGTCAGTGGGACATGGGAACTGAAAAGACTGCAAGCAGGTGTTTATAGTTCTGTCCATTGATCCATCAATCAATCTTTATCTGATATATAGCGCCCTCCCcaaaataatttcacagcaATGCTTTGCAGGGCGATGTAAAGTACGAGTCAGTGGGCATGGTGAGTTCAGACAAGGGGGAGCTTCGAGACATTAGAGAGAGGCTGAACAGAAACGAGTGCCAGTAtctggaaaacatttattttccccccattaTAAAGCTGACGGGTGTGTGCGAGTCTGAGTGAATGGGGCCCTTGAGGTTACAGCAGTGCCACATTCCTCGCTGCGTTATGGGAAAGCCTGGCCCGAAGAGAACAGCCAGTGCTGTGTTTGACTGCCGCTGGCGTGCCGCCCGCCTCTGACCTCATGCGCTCGCCGTCTACGCCCCCCTCCGCCTGTGGCAACGCAAGAGGCTCTAATGCAGCCCCGTAGAGTCACTGCTCCGGAAATGTCTGCattacatgattattttcaCTCTGACGTGGTGACACGGCCGGGTCTGACCTCCTCCTCCAGGCATGTGATCTGTGCTCCAGTCCGCTGGCGTTCGCACTGCACTCCTGTTTGATGGTGCAGGTTTGTCTGTATCATAACTGACTACAGCCCAGTGCCCCACAGCCACCCCTCTGCAGTGCAGTCAGCGCAGCAGGTGCCGAAACCCTGGCCAGCCACAAGATGGCGCCAGTGACAGCATCGGCCCTTTTAGTGCTCCATCGTACAGGCAGGATGTAGGAGAGCTGGAGGGCTCATTGGTGCTGCTGTTCGTCAAACAGGCAAACTGTGCTTTTATTCCTGATAGAAATCTGAACTTGTCCTCTTGTATTTATAACACAGAAGGTACCTTGACTATAGGATACGTAATTAACAGAATAACAGACTAAAATAATCTGCAGTTGTCCAGATAAACACAGGAGGTAGGTGAGGGCACTCTCCACAGCATCACCAAGCTGCGATGAGTCACTGCCACTGGGGTGTTCAGGGCAAGAGAAAACCCCCATCCCTCTGAACCCTCAGCATTCACAATGTGCTGATCTTTGCGTTGGTTTTTTATTTTCGTGTGCTTATTATTTGTAGCCAGTGTGGAGAAGTGAAGCATTTCCACTCTGtcacactgaaaagaaaaactagaTCCGGTAGAAGCATCGGGCTGTATTTTAATAGGTGTTACAACATGTCGGCCTCCCCGCCCCGCCACCCCCCCACGGTCCGTATGTCTGTGCCGTGTTCGTTCGGTGTTCGCTGTAACCCAGGCTGCCGTGTGAGATAATTAACAGATTGGTTCATTGCGGAGAGGTTCTGAGCAGTAAAGCTGAAGGCTGTCACTGAGCTGGCCAGTCCAGTGGGAGAGGTTGCTCGGTGTGTCATGGGCTTTTAGAAGCTGTTTCCATGCCAAACGTATTGTGCACCACAGCCAAATTCActctttaatgtattaaaaagtcATCCTTGTCCATCTTGCACAAAGTCCCCTGAGTGCAGCACTATCACTGGGGGGTATTATTACTCCACTGTCACCCACCGCATCATGAAGTTGTGCTGTGGCTCTGGCTGTATTCGAGGGGAATGCTGGCAATCCACGGCACACTCTCGACTGCCAGACAGCCCCGGGCAAATGAGCAATCGTGCTCAATCGTTTCAATCTACTGTCTTTAACCACAAGCATGACCAAGTGCactaaagagaaagaaagaaatgtagcAGAAATGTGTAGCAAAAAGAGTTTGGTAACTTAGAATCACGTACAGTCAGTTTGCTGACCCTGTCAAATCAGCTCAACTGTATATGTGAGTCGCTaaaagagagggaagagagtTTTGCTAAACTGCCTCCAGAACGCTGCTTGTTCAGTAACTGGACGGTCTGCAGTCGCCCCGGTGTGCAGGGAGACGGGCCGCCACTGAGAATGGGGGATTGTGGGGAATGAAGCCTCTGCAAGCCTGTTAGGATCCCCAGCCTTGGGCGTtaatagaaaaaacaactgATAATTTCTCAATCAGCCACTTGATCTGATGATTGTACTGTGAtggaaaatgaaggaaaaaaatgctttggagTTTGTTTCTCTTGTTGTTCTTTGACAGAAATGAGAGGGTTCTGCCACCCTTTCACTGGGGGGGTCAGGAAGCAGTGGCGCTTTGTTCTGGGCGTTTCTCTTTTATGTTTCTCTGTGGCGGTGGCAGCGGTGGGCCACGGCATCAGGCCAAAGTTGGAGCCCCCCCTGGGAGAACGAAGGCCGCACTGACTTAAGAAAGTGTGACTCACGGTGAGCAGTGACTACCCTTCTGTGCTGAGATAGCGGGTCCCTCTGGCACTGTTCCCCATCTCTGAAGCGGCCCAGTGGCCACGTGTGAGCGACTCTGCCCGGTTTGgttttggtgtgttttgtttttctgttttgtttttctgaaatgtgaGCCTTAATCACACAGTGTCTGCGCAGCGGCAGCCCGGCGTTGCTGGCGTCTGATTGTACTTCGTAGTCCCTGTGTGCGTGCTTGTCCACCATGTCATCACATAGCGGTGTCCACTTAGAGACGTACAAATTgtgttctaaaataataataataataataaataaaaaacgttGAAAACGCTACTTTGACATGAGACGCCCAGCTGgcaaagggatttttttttttttttctttcttggtttGATTTTTGCAACCTATGCATGCCGCATGGACACGTTTTGAAggaaaagaataatacaattatcttGTTTTTGACATGAAGCAAGATCCACAGGAGGGCAGTAATCTCTCTCACAGCCCCGCGGGACAGACGCCCACCCCCTCTCCGACTCGAGAGCCGAAAGCTCTGTCTGTGCTGATGAGAGGGTGAATAAGGACGAGAGTCTTCAGCTGAGACACCCCCAGCAAAGACCGAGGGCCAGCCAGGACTCTACTTTCCCAAAAGTCAGCTTGTAATGTgatgggagggagagggggcacGTGCTGTGGTGCCAATAGCCAGCCGAGGCTCTGTCTGACCCGCGGGTTTACGGCTCCTGTGCTACAGACTCATCCCTGGAGTTGCTAcgtttgttttctaaaaaaaagcacagatcaCGTCAGACACGGAGGCGGAGCTAGAGTGTGGCCTTTTCGTGGACAACCGGCCCGACAGGCAGCTGAACAGCAGTCTGTGCGTATTATTGTCTGCATGGGGGTGCCGAAAAAGTGCAGGATCCCCCCACTGCCCAgcaactggactggactgcaacTCCTGCTCCTTGTGGGACTcgtgagacagacagagagaggagggtggGGCTCTAATCAATGTACAGCACCCAGGCTACATTAAAGAGAgcgaaaggcgctatataaatatgaactGTGTTGTGATTTCAGTGTATTAGGAAGGCGTGTacagagggaaagggagagagaggaagataCAGTTACAGCTGTGACTTACTGAGACCGCTTGGATGTACATGACAGTAGCGTTTGCCAAAGCTTGAACCTGTGAGGCACTCTAGGGTACGTGTCTTTTATGTGTAACTCTttctgtgtttagttttttggttgGGTTGGAGGtttggggaaagaaaacaaaagcattattGCATCCTGTCCTCGTGTCCCATTTTGTGTTGAAGGGCACTAaatcctccctcctcccccgGTCCTCctctcctgactgcagctgggGGTTTACATAGAAGTGTACTAACACCAAAACCAACAAGAAAGAGGAACTAGCCTGATCTTAATATGGCCCCCGAGACTAATCCAGTTCGATGTGGTTTATTAGTGGAAAGAAATGGAATCAACAAAATGTAGGCTTCCGATCTGTAACCAAAAATCTCATCCTTCTCTTCTGAAGagtaattaactttttataatgataataatgaagtaGTCAGAGTTGAATCACTTGGCCTTCTGGTCCTGCGGAcgcccacacacacaagcagccGTCTCTCCACTGACTCCTGGCACCACGGGGTGTATCGATGTGTTTTGCAGGTTCTGTTGCAATAATACATTGTTCTTGTCCAGGAAAAAAACGATCTGTTGTTggggttttatgtttttgataaCATAATGGTGCCCGTACCGTGTTGGCAAAGGAAGGCGGAGTGAGAACCGGGAGGCAGGGTAATTGCAGGCCTCATTCTTCACCGCAGTTTGGGAATAGCAGCTTTATCCAGGGCATCCCTCCGAGGCatttcacaacaaacaaacaaaaacaaaacttatgtggcaaattataattaaaggcaaaagaaaactaaaaaaatgtgtaaGCTAGCGGGGGTTTAGATTCCAGTGCCTGAGAACCACAGTCTTCTGGGATTGGCTTTCCATCCCCACATCTGGACggatatatttattcatttaaacgTGCTGCGGGCAAATTTAACGCagcttttttttggttgttgttgttctgctgGCTCGtctgtttctcctctctctgAGCTCTGATGCGAATCGGGGGCGCCAGTTTGGCGTGTCGTGTACTTCTCTGTACTGTAGATTCACATCGCAGAGAGCCGCGCTTCTCCTGCCGCACTAAATGGGCTCAGTTACGCCGTGAAGAAGATGTGGCTGGTGAGGGCTGGAGCCAGACCCCCGTTCCAATCAGTATTAAGACGTCAAACTAATCCTTTTCTAAATCTTGCaggaaagtgtgttttttttgtttgtttttgggttGGGGTTCCCCCCCTACAAGTTGTACAGGTGATCCATAACTGAGAGCGTCCTGCTGGTTGTAAag

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38995 lncRNA downstream 227448 2176162 ~ 2176966 (-) True G31137
TU38845 lncRNA downstream 342453 1975704 ~ 2061961 (-) True G31021
TU38926 lncRNA downstream 471000 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 507982 1885673 ~ 1896432 (-) False AMCG00019059
TU38918 lncRNA downstream 507982 1885673 ~ 1896432 (-) False AMCG00019059
TU39114 lncRNA upstream 64804 2474684 ~ 2474983 (-) True G31234
TU39116 lncRNA upstream 70058 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 83957 2493837 ~ 2494055 (-) True G31244
TU39125 lncRNA upstream 84836 2494716 ~ 2496567 (-) True G31245
TU39126 lncRNA upstream 90253 2500133 ~ 2509157 (-) True G31246
AMCG00019077 mRNA downstream 17265 2380537 ~ 2387149 (-) True AMCG00019077
AMCG00019079 mRNA downstream 46559 2342598 ~ 2357855 (-) True AMCG00019079
AMCG00019080 mRNA downstream 92014 2303870 ~ 2312400 (-) True AMCG00019080
AMCG00019078 mRNA downstream 105746 2291500 ~ 2298668 (-) True AMCG00019078
AMCG00019073 mRNA downstream 169897 2208790 ~ 2234517 (-) True AMCG00019073
AMCG00019084 mRNA upstream 60 2409940 ~ 2434075 (-) True AMCG00019084
AMCG00019085 mRNA upstream 61584 2471464 ~ 2484739 (-) True AMCG00019085
AMCG00019087 mRNA upstream 111033 2520913 ~ 2525129 (-) True AMCG00019087
AMCG00019092 mRNA upstream 228620 2638500 ~ 2657544 (-) True AMCG00019092
AMCG00019091 mRNA upstream 266435 2676315 ~ 2686173 (-) True AMCG00019091
TU38988 other downstream 225764 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 321143 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 321143 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 693871 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 1080818 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2522958 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11252236 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12082011 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12082011 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12541962 14951842 ~ 14991996 (-) True G33259

Expression Profile