RNA id: TU39114


Basic Information

Item Value
RNA id TU39114
length 300
lncRNA type intronic
GC content 0.47
exon number 1
gene id G31234
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2474684 ~ 2474983 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaagtatttgatcccctgctgattttgtacgtttgcccactgacaggtgtcttttatacaggtaacgagctgagattaggagcactctcttaaagggactctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcggcaagcagcttggtgagaaggtgacaacagttggtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39093 lncRNA downstream 64804 2404414 ~ 2409880 (-) True G31218
TU38995 lncRNA downstream 297718 2176162 ~ 2176966 (-) True G31137
TU38845 lncRNA downstream 412723 1975704 ~ 2061961 (-) True G31021
TU38926 lncRNA downstream 541270 1932341 ~ 1933414 (-) False G31082
TU38916 lncRNA downstream 578252 1885673 ~ 1896432 (-) False AMCG00019059
TU39116 lncRNA upstream 4955 2479938 ~ 2480415 (-) True G31236
TU39124 lncRNA upstream 18854 2493837 ~ 2494055 (-) True G31244
TU39125 lncRNA upstream 19733 2494716 ~ 2496567 (-) True G31245
TU39126 lncRNA upstream 25150 2500133 ~ 2509157 (-) True G31246
TU39127 lncRNA upstream 27125 2502108 ~ 2509194 (-) False G31246
AMCG00019084 mRNA downstream 40609 2409940 ~ 2434075 (-) True AMCG00019084
AMCG00019077 mRNA downstream 87535 2380537 ~ 2387149 (-) True AMCG00019077
AMCG00019079 mRNA downstream 116829 2342598 ~ 2357855 (-) True AMCG00019079
AMCG00019080 mRNA downstream 162284 2303870 ~ 2312400 (-) True AMCG00019080
AMCG00019078 mRNA downstream 176016 2291500 ~ 2298668 (-) True AMCG00019078
AMCG00019087 mRNA upstream 45930 2520913 ~ 2525129 (-) True AMCG00019087
AMCG00019092 mRNA upstream 163517 2638500 ~ 2657544 (-) True AMCG00019092
AMCG00019091 mRNA upstream 201332 2676315 ~ 2686173 (-) True AMCG00019091
AMCG00019093 mRNA upstream 283117 2758100 ~ 2759745 (-) True AMCG00019093
AMCG00019094 mRNA upstream 293797 2768780 ~ 2785358 (-) True AMCG00019094
TU38988 other downstream 296034 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 391413 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 391413 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 764141 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 1151088 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2457855 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11187133 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 12016908 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 12016908 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12476859 14951842 ~ 14991996 (-) True G33259

Expression Profile