RNA id: TU39249


Basic Information

Item Value
RNA id TU39249
length 1884
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G31329
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2635184 ~ 2638120 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACAGTTCTAAACCTGCCCACATGTCGCTTCATTGTTTATTCATTCCATTTGTACACTAACTGAACAAGAAATGATGCACAGATACTTTGACATGCCTGGGCAGCGCTCATCGATCTGCCATCCCAAATCCAGCCAGTGATTTACAACCCAGTCTTTATTAGATTTCACTACAAccaaataaatctgttttccaCAGCTCCAGCAGACATGCTGTGTAATTCGTCCATTGTCATtggatttcttagcagacacccatatccagggtgccttacagttgttacaatatatcacattattgttacacacaattacccatttatacaggtgCGTTTGTACTGGATCAATCTCGGCACAGAGCCACGCTCAAGGGTGCAACAGCAGTGTCTCAGGACACAGAACCACTGTTTGTTAAGGGAGGGGGAAATTTAAATTCCCTGCTTTGCCTGATTAAGAATCTGATTATTAGAATCAGatgcacatttttttctgtCCCTGGTCATGAGGATGAGTAATATGAATGACATGCTTCGAGTGGAGATCTgctgtagtgtttttttaattctttattgtCCTTGGATGATCTCTGGTATTTCAAATGAGTATCGTCCTCAGAGCTACCTCCTCTGAGGGCAATACTGTAAACTCTGTACTACGTCTCCATTGAAAACCtctattgattatatatatatatatatatatataaatggaaaacaaaacctcaaAGCATATTATAAATGGCTTATTTGTAGATAAATATAGAGTTCATCATCCACATCAGGCTTTTCCCCCAAAGGTATAGTTAGTCACACAAACATCATATATACATTGCAATCATTCAACAAGACCACGAAATAGAGGCGAGGGTTTAACTAAGTGCTTGTGTCGATACAGAGTCTTAATAGTCTGCAAAGGTCATGGTGTTGGCAATGGTTAGTTGGAAAAATCACACAACGCATCCTTCTATGAAAAGAGACTTGGAGAATCTTATTTTTATCTTAGTCTTATTCCCCAAAACCAATCCAGTTTGCTCCCTTGAGGAATGGCCCACCAGCGTGCGGACGAGGCCAGCGGTCTGACCAGCTGCGCCGCTCCGTGTCACCTCACTGCAGTCTAAACGATGTGCCTTTAATGGAGAGGCACTATTAATGAGAGCATGATATTTCCCCCAGATCTCAGTGATATGACTGAGAAACAGACGACGGACTTAAAAGGCAGGCTGTAAAATGAGAAATTAACGCTGAGCTGAGTGCCCAGCCGGCTCGCGGGGATGAGAGAGAAATGTCTGCAGCTCATACTTTATACAGAGCTAATGTAGGTAATGACACTGATTTGAAATGTCCAAGTTGTTTTGGAGCAACCTTTGATGCCAATTCCCGTCCCACTAATATGCACCTGGCCACTGAACTCCGAGTCTAATATGCTGTAGGTCTTTCATTGCTGAAAAGCCAATAAATGCACCTTCTCTTTCCAGCAAGTTTCCAGTCCATGGTTTATAATGGAAACTGCAGACTAAACCATCACCAAACCAAGAAAAGCTGGTGTGTGTTTTCCGAATTAGCCCTGGCGAGgttgaattgtgtgtgtgtgtgtgtgtgtgtgtgtgcgggtggggggggctggTTTGAAGAGAGGTGCGTCCCGTCTGAATTTGAATGCAGTTCTGGTGTGTTCAGACACCACCAcatccctccttccctccctcgcTTCCTGCAGTCTCACAAGAAGACGGGCACCTCTAGCTTGGTGCGGAGGTGTGCCCGTTTCCTCTCCCGCTCCTGGACGTAGCCCTGCAGCTTGTCGGTGGAGAAATAGACCACGGAGTGCCGGTGCTTAGAGGCGGGGACGCCCTGTATCCACGGTAAGCGAAGGCACTCGGCGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39218 lncRNA downstream 63896 2566801 ~ 2571288 (-) True G31300
TU39214 lncRNA downstream 72390 2561475 ~ 2562794 (-) True G31296
TU39127 lncRNA downstream 125990 2502108 ~ 2509194 (-) False G31246
TU39126 lncRNA downstream 126027 2500133 ~ 2509157 (-) True G31246
TU39269 lncRNA upstream 216328 2854448 ~ 2856659 (-) True G31346
TU39287 lncRNA upstream 458589 3096709 ~ 3097340 (-) True G31363
TU39319 lncRNA upstream 550607 3188727 ~ 3190187 (-) True G31390
TU39328 lncRNA upstream 573284 3211404 ~ 3211605 (-) True G31399
TU39363 lncRNA upstream 706737 3344857 ~ 3345240 (-) True G31431
AMCG00019087 mRNA downstream 110055 2520913 ~ 2525129 (-) True AMCG00019087
AMCG00019085 mRNA downstream 150445 2471464 ~ 2484739 (-) True AMCG00019085
AMCG00019084 mRNA downstream 201109 2409940 ~ 2434075 (-) True AMCG00019084
AMCG00019077 mRNA downstream 248035 2380537 ~ 2387149 (-) True AMCG00019077
AMCG00019079 mRNA downstream 277329 2342598 ~ 2357855 (-) True AMCG00019079
AMCG00019092 mRNA upstream 380 2638500 ~ 2657544 (-) True AMCG00019092
AMCG00019091 mRNA upstream 38195 2676315 ~ 2686173 (-) True AMCG00019091
AMCG00019093 mRNA upstream 119980 2758100 ~ 2759745 (-) True AMCG00019093
AMCG00019094 mRNA upstream 130660 2768780 ~ 2785358 (-) True AMCG00019094
AMCG00019097 mRNA upstream 439770 3077890 ~ 3094196 (-) True AMCG00019097
TU38988 other downstream 456534 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 551913 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 551913 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 924641 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 1311588 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 2294718 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 11023996 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 11853771 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 11853771 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 12313722 14951842 ~ 14991996 (-) True G33259

Expression Profile