RNA id: TU39274


Basic Information

Item Value
RNA id TU39274
length 241
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G31351
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3076916 ~ 3077156 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTCGGTAAAACAAGCTGCTGAAGGAGGACGACGCAGTGGTGTGTCAAGTATGCAGTCGGAGTGGAGAAAGTATTGCCTATATTGGACTGTCCAACTCAGATCCCATTTACAGTGTTTTAAGATAttttgaatgaaagaaagacataAAAAAGCAGCATAAAGAATCACCAAGATGCAATGTGTTCCAAAACGTATTATTGTCCCTCAAccggaaaaacaaaaaaggaagtaaataaaaa

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39148 lncRNA upstream 509938 2565509 ~ 2566978 (+) False AMCG00019089
TU39161 lncRNA upstream 509938 2565509 ~ 2566978 (+) False AMCG00019089
TU39092 lncRNA upstream 667029 2404126 ~ 2409887 (+) True G31217
TU38999 lncRNA upstream 867727 2188968 ~ 2209189 (+) True G31141
TU39001 lncRNA upstream 884708 2191421 ~ 2192208 (+) True G31143
TU39304 lncRNA downstream 62531 3139687 ~ 3165672 (+) True G31380
TU39362 lncRNA downstream 267599 3344755 ~ 3345244 (+) True G31430
TU39364 lncRNA downstream 276184 3353340 ~ 3388685 (+) True G31432
TU39393 lncRNA downstream 787033 3864189 ~ 3864604 (+) True G31461
TU39435 lncRNA downstream 1289801 4366957 ~ 4368203 (+) False AMCG00019111
AMCG00019095 mRNA upstream 226916 2845380 ~ 2850000 (+) True AMCG00019095
AMCG00019088 mRNA upstream 411052 2658553 ~ 2665864 (+) True AMCG00019088
AMCG00019090 mRNA upstream 440513 2619235 ~ 2636403 (+) True AMCG00019090
AMCG00019089 mRNA upstream 458864 2520104 ~ 2618052 (+) True AMCG00019089
AMCG00019086 mRNA upstream 575277 2491498 ~ 2501639 (+) True AMCG00019086
AMCG00019096 mRNA downstream 17296 3094452 ~ 3100171 (+) True AMCG00019096
AMCG00019100 mRNA downstream 113456 3190612 ~ 3210890 (+) True AMCG00019100
AMCG00019101 mRNA downstream 180505 3257661 ~ 3275357 (+) True AMCG00019101
AMCG00019099 mRNA downstream 205004 3282160 ~ 3285119 (+) True AMCG00019099
AMCG00019104 mRNA downstream 554579 3631735 ~ 3635688 (+) True AMCG00019104
TU38962 other upstream 929353 2141830 ~ 2147563 (+) False G31110
TU38960 other upstream 929353 2143921 ~ 2147563 (+) True G31110
TU38794 other upstream 1205537 1861829 ~ 1871379 (+) False AMCG00019064
TU38640 other upstream 1823181 1253366 ~ 1253735 (+) True G30877
TU38636 other upstream 1839279 1233494 ~ 1237637 (+) True AMCG00019030
TU39281 other downstream 17322 3094478 ~ 3096426 (+) False AMCG00019096
TU39314 other downstream 126631 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other downstream 126631 3203787 ~ 3210683 (+) False AMCG00019100
TU40051 other downstream 4343345 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 5268299 8345455 ~ 8384592 (+) False G32130

Expression Profile