RNA id: TU39363


Basic Information

Item Value
RNA id TU39363
length 384
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G31431
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3344857 ~ 3345240 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagctgctccttctcatccctggcccctaagtggtggaacgacctgcccaccgaagtcaaaacagcagagtccttgacctcattccggcgcttactcaagacgcatctcttccgacagcacttgtaatattagtcctctatccctgctagatagcacttcagcttattatgctcctcgcgttcttgattgctttcctccttgctccctttcccgtagccctcgtctgtaaccctacatcttgacagcacttagctttcaccgtccaggatgtaggaagtctcttactgtacttgtgtaaattgtaaattggaatttgtaaaatgtattattttgaattgctatgttttagctaagttgaatttgtaatgattgatgccttgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39328 lncRNA downstream 133252 3211404 ~ 3211605 (-) True G31399
TU39319 lncRNA downstream 154670 3188727 ~ 3190187 (-) True G31390
TU39287 lncRNA downstream 247517 3096709 ~ 3097340 (-) True G31363
TU39269 lncRNA downstream 488198 2854448 ~ 2856659 (-) True G31346
TU39249 lncRNA downstream 706737 2635184 ~ 2638120 (-) True G31329
TU39376 lncRNA upstream 257160 3602400 ~ 3602611 (-) True G31444
TU39386 lncRNA upstream 288616 3633856 ~ 3638241 (-) True G31454
TU39402 lncRNA upstream 590660 3935900 ~ 3936123 (-) True G31470
TU39403 lncRNA upstream 650648 3995888 ~ 3996123 (-) True G31471
TU39422 lncRNA upstream 883335 4228575 ~ 4229414 (-) False AMCG00019109
AMCG00019103 mRNA downstream 44771 3298338 ~ 3300086 (-) True AMCG00019103
AMCG00019102 mRNA downstream 171421 3171748 ~ 3173436 (-) True AMCG00019102
AMCG00019098 mRNA downstream 176727 3150830 ~ 3168130 (-) True AMCG00019098
AMCG00019097 mRNA downstream 250661 3077890 ~ 3094196 (-) True AMCG00019097
AMCG00019094 mRNA downstream 559499 2768780 ~ 2785358 (-) True AMCG00019094
AMCG00019105 mRNA upstream 533456 3878696 ~ 4065944 (-) True AMCG00019105
AMCG00019110 mRNA upstream 830235 4175475 ~ 4176838 (-) True AMCG00019110
AMCG00019108 mRNA upstream 840500 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019109 mRNA upstream 875203 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019112 mRNA upstream 1023907 4369147 ~ 4383176 (-) True AMCG00019112
TU38988 other downstream 1166207 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 1261586 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 1261586 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 1634314 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 2021261 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 1587598 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 10316876 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 11146651 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 11146651 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 11606602 14951842 ~ 14991996 (-) True G33259

Expression Profile