RNA id: TU39451


Basic Information

Item Value
RNA id TU39451
length 245
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G31518
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4341409 ~ 4341653 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGCCGCCGGGCCCAGGCCGGGCCTCAGGAAGTTCTGCTTGAGGTTGAGGTGCGTCAGGTCCTGGCTGTAGAAGAGATTGGCAGGCAGGTGCTCGAGGCTGCAGCAGGACAAATCCACCGAGCTAATCCGCTGGGACACGATCTGAAACAAGAACACACACAGCGGGAGGGTTAGAGCTGAAAACCAGGGGAATGACCTACTGCTGCCGACAATCCTGCTGCTAATGCCATGCCATTAAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39450 lncRNA downstream 5912 4335251 ~ 4335497 (-) True G31517
TU39449 lncRNA downstream 8832 4332171 ~ 4332577 (-) True G31516
TU39422 lncRNA downstream 111995 4228575 ~ 4229414 (-) False AMCG00019109
TU39403 lncRNA downstream 345286 3995888 ~ 3996123 (-) True G31471
TU39402 lncRNA downstream 405286 3935900 ~ 3936123 (-) True G31470
TU39452 lncRNA upstream 9034 4350687 ~ 4350990 (-) True G31519
TU39453 lncRNA upstream 11765 4353418 ~ 4353620 (-) True G31520
TU39455 lncRNA upstream 15203 4356856 ~ 4357071 (-) True G31522
TU39456 lncRNA upstream 18454 4360107 ~ 4360346 (-) True G31523
TU39458 lncRNA upstream 22543 4364196 ~ 4365044 (-) True G31525
AMCG00019109 mRNA downstream 111418 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019108 mRNA downstream 133928 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019110 mRNA downstream 164571 4175475 ~ 4176838 (-) True AMCG00019110
AMCG00019105 mRNA downstream 275465 3878696 ~ 4065944 (-) True AMCG00019105
AMCG00019103 mRNA downstream 1041323 3298338 ~ 3300086 (-) True AMCG00019103
AMCG00019112 mRNA upstream 27494 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019117 mRNA upstream 115807 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019116 mRNA upstream 130503 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019123 mRNA upstream 425816 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019122 mRNA upstream 482296 4823949 ~ 4840696 (-) True AMCG00019122
TU38988 other downstream 2162759 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2258138 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2258138 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 2630866 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3017813 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 591185 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 9320463 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 10150238 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 10150238 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10610189 14951842 ~ 14991996 (-) True G33259

Expression Profile