RNA id: TU39452


Basic Information

Item Value
RNA id TU39452
length 304
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G31519
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4350687 ~ 4350990 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTAATCCACCCTGTAAACACGTATTcacatatgaatatatataaaagtgctGGCTTCTCCTCCGTATCCCGTACCTGAGATCCACATGCTTGATGTGCAGCAGGCGAAACCACTGCAGGTCGAGTGTTCTCAGGCTGTTCCCTGACATGCACAGCTTCTCCACGGCCGACAGCCGCTCCAGCACGGGGGGCACCTCGGCGAACTCGTTGAAGGACAGGCCGAGGTAGCTGAGGTGCTGCAGGTTCCCCAGCTCCGACGGGAGCGAGGACAGACAGTTTCCATCCAGCAGAAAGGTCTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39451 lncRNA downstream 9034 4341409 ~ 4341653 (-) True G31518
TU39450 lncRNA downstream 15190 4335251 ~ 4335497 (-) True G31517
TU39449 lncRNA downstream 18110 4332171 ~ 4332577 (-) True G31516
TU39422 lncRNA downstream 121273 4228575 ~ 4229414 (-) False AMCG00019109
TU39403 lncRNA downstream 354564 3995888 ~ 3996123 (-) True G31471
TU39453 lncRNA upstream 2428 4353418 ~ 4353620 (-) True G31520
TU39455 lncRNA upstream 5866 4356856 ~ 4357071 (-) True G31522
TU39456 lncRNA upstream 9117 4360107 ~ 4360346 (-) True G31523
TU39458 lncRNA upstream 13206 4364196 ~ 4365044 (-) True G31525
TU39459 lncRNA upstream 14172 4365162 ~ 4365401 (-) True G31526
AMCG00019109 mRNA downstream 120696 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019108 mRNA downstream 143206 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019110 mRNA downstream 173849 4175475 ~ 4176838 (-) True AMCG00019110
AMCG00019105 mRNA downstream 284743 3878696 ~ 4065944 (-) True AMCG00019105
AMCG00019103 mRNA downstream 1050601 3298338 ~ 3300086 (-) True AMCG00019103
AMCG00019112 mRNA upstream 18157 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019117 mRNA upstream 106470 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019116 mRNA upstream 121166 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019123 mRNA upstream 416479 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019122 mRNA upstream 472959 4823949 ~ 4840696 (-) True AMCG00019122
TU38988 other downstream 2172037 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2267416 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2267416 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 2640144 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3027091 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 581848 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 9311126 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 10140901 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 10140901 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10600852 14951842 ~ 14991996 (-) True G33259

Expression Profile