RNA id: TU39456


Basic Information

Item Value
RNA id TU39456
length 240
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G31523
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4360107 ~ 4360346 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAATGCTACGCCTCAGAAAGTGAAACTGTGTCTTACTTCAGCAGCTCCAGTGTTTTGTGATCCAAGGCCAGCCTGGGGTTTCCAGTGAGGTCGAGCTCCTGCAGCTTCGGAGGCAGATTCTCTGGCAGCGTGATCTCGCTCAGCTCGTTGCAGCTCAGgtccacacactgcaacacacaagAGCGCAGGGCACAGGGTTGGAGGGGCGCCAGACATGCGGGGCTCTCCTGCCTCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39455 lncRNA downstream 3036 4356856 ~ 4357071 (-) True G31522
TU39453 lncRNA downstream 6487 4353418 ~ 4353620 (-) True G31520
TU39452 lncRNA downstream 9117 4350687 ~ 4350990 (-) True G31519
TU39451 lncRNA downstream 18454 4341409 ~ 4341653 (-) True G31518
TU39450 lncRNA downstream 24610 4335251 ~ 4335497 (-) True G31517
TU39458 lncRNA upstream 3850 4364196 ~ 4365044 (-) True G31525
TU39459 lncRNA upstream 4816 4365162 ~ 4365401 (-) True G31526
TU39494 lncRNA upstream 247217 4607563 ~ 4607857 (-) True G31558
TU39509 lncRNA upstream 317297 4677643 ~ 4678067 (-) True G31572
TU39592 lncRNA upstream 580713 4941059 ~ 4986384 (-) True AMCG00019128
AMCG00019109 mRNA downstream 130116 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019108 mRNA downstream 152626 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019110 mRNA downstream 183269 4175475 ~ 4176838 (-) True AMCG00019110
AMCG00019105 mRNA downstream 294163 3878696 ~ 4065944 (-) True AMCG00019105
AMCG00019103 mRNA downstream 1060021 3298338 ~ 3300086 (-) True AMCG00019103
AMCG00019112 mRNA upstream 8801 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019117 mRNA upstream 97114 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019116 mRNA upstream 111810 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019123 mRNA upstream 407123 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019122 mRNA upstream 463603 4823949 ~ 4840696 (-) True AMCG00019122
TU38988 other downstream 2181457 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2276836 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2276836 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 2649564 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3036511 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 572492 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 9301770 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 10131545 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 10131545 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10591496 14951842 ~ 14991996 (-) True G33259

Expression Profile