RNA id: TU39458


Basic Information

Item Value
RNA id TU39458
length 849
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G31525
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4364196 ~ 4365044 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCATGACGAGGAAGGTGTTGGTCATGTACTCGTCCTCGCTCTTGCTCCGGTGCAGCTCCTCCGCCAGCACGTCGCTCATGGTGCACTGCAGCAGGTAGGGCACCTCCACGTTGCGGTCGCCATCAAACACCCCGTACAGCGCCTCCCGGTTGCCGCAGAAGTTGTTGACCGACAGGGCGGCCACACATAGCCTGAGGAAGACACCCGCGTCAAATGATTATGAACACTTGATATCATATACTAGttaatcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacggacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctgaacaaactccccatttggctgaagagacaatttgggaacatttaaaaacagactggataggatccttgatcactcagttattaatggacaccaaataatgcacgatggggcgaatggcctcctctcgattgtaaactttcttatgttcttatttactGTGTTGATTGGATTTTGCCTGCTGTTGCGCACGGGCAGTAACTGTTCTTGACTAAATAACTGGGTGGCAGGAATAGAGAATGATTTCTAAATTGGTGGCATCTGGAACAAAGGAACCAAGTCAGCGTTGGGTTTAATTGTGTGCTTTGCCACTTAAAATTctttaaactaaaatgaatgaataatttaatctCTGCTGCCTTTACTTTCCTGTCATAATTCATCCCACGGCGTAAACTAatgccatttaaatattttttgaatgtttatgttttgaGGCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39456 lncRNA downstream 3850 4360107 ~ 4360346 (-) True G31523
TU39455 lncRNA downstream 7125 4356856 ~ 4357071 (-) True G31522
TU39453 lncRNA downstream 10576 4353418 ~ 4353620 (-) True G31520
TU39452 lncRNA downstream 13206 4350687 ~ 4350990 (-) True G31519
TU39451 lncRNA downstream 22543 4341409 ~ 4341653 (-) True G31518
TU39459 lncRNA upstream 118 4365162 ~ 4365401 (-) True G31526
TU39494 lncRNA upstream 242519 4607563 ~ 4607857 (-) True G31558
TU39509 lncRNA upstream 312599 4677643 ~ 4678067 (-) True G31572
TU39592 lncRNA upstream 576015 4941059 ~ 4986384 (-) True AMCG00019128
TU39751 lncRNA upstream 1053952 5418996 ~ 5511930 (-) True G31774
AMCG00019109 mRNA downstream 134205 4220443 ~ 4229991 (-) True AMCG00019109
AMCG00019108 mRNA downstream 156715 4185740 ~ 4207481 (-) True AMCG00019108
AMCG00019110 mRNA downstream 187358 4175475 ~ 4176838 (-) True AMCG00019110
AMCG00019105 mRNA downstream 298252 3878696 ~ 4065944 (-) True AMCG00019105
AMCG00019103 mRNA downstream 1064110 3298338 ~ 3300086 (-) True AMCG00019103
AMCG00019112 mRNA upstream 4103 4369147 ~ 4383176 (-) True AMCG00019112
AMCG00019117 mRNA upstream 92416 4457460 ~ 4468048 (-) True AMCG00019117
AMCG00019116 mRNA upstream 107112 4472156 ~ 4475867 (-) True AMCG00019116
AMCG00019123 mRNA upstream 402425 4767469 ~ 4791923 (-) True AMCG00019123
AMCG00019122 mRNA upstream 458905 4823949 ~ 4840696 (-) True AMCG00019122
TU38988 other downstream 2185546 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 2280925 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 2280925 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 2653653 1705899 ~ 1710543 (-) False G31035
TU38662 other downstream 3040600 1321614 ~ 1323596 (-) True AMCG00019034
TU39603 other upstream 567794 4932838 ~ 4935996 (-) False AMCG00019129
TU41485 other upstream 9297072 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 10126847 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 10126847 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 10586798 14951842 ~ 14991996 (-) True G33259

Expression Profile