RNA id: TU39503



Basic Information


Item Value
RNA id TU39503
length 202
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G31566
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 4747548 ~ 4747749 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctggtgaactcaggaagaccacggaaaacaactgtggtggatgacagaagaattctttccctggtgaagaaaaaccccttcacaacagttggccagatcaagaacaccctccaggaggtaggcatatctgtgtctaAGTCACCAATCAAGAGAatacttcaccagagtaaatacagagggtttaccacaacatgtaaacagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39435 lncRNA upstream 379345 4366957 ~ 4368203 (+) False AMCG00019111
TU39393 lncRNA upstream 882944 3864189 ~ 3864604 (+) True G31461
TU39364 lncRNA upstream 1358863 3353340 ~ 3388685 (+) True G31432
TU39362 lncRNA upstream 1402304 3344755 ~ 3345244 (+) True G31430
TU39304 lncRNA upstream 1581876 3139687 ~ 3165672 (+) True G31380
TU39572 lncRNA downstream 225223 4972972 ~ 5030095 (+) True G31622
TU39620 lncRNA downstream 346132 5093881 ~ 5127629 (+) True G31663
TU39654 lncRNA downstream 430185 5177934 ~ 5183039 (+) True G31690
TU39782 lncRNA downstream 825023 5572772 ~ 5577699 (+) True G31799
TU39824 lncRNA downstream 1002068 5749817 ~ 5750063 (+) True G31820
AMCG00019120 mRNA upstream 4315 4733553 ~ 4743233 (+) True AMCG00019120
AMCG00019121 mRNA upstream 23767 4715962 ~ 4723781 (+) True AMCG00019121
AMCG00019119 mRNA upstream 195647 4520057 ~ 4551901 (+) True AMCG00019119
AMCG00019118 mRNA upstream 256543 4479433 ~ 4491005 (+) True AMCG00019118
AMCG00019115 mRNA upstream 295112 4438432 ~ 4452436 (+) True AMCG00019115
AMCG00019125 mRNA downstream 164782 4912531 ~ 4930234 (+) True AMCG00019125
AMCG00019126 mRNA downstream 202278 4950027 ~ 4963233 (+) True AMCG00019126
AMCG00019127 mRNA downstream 220372 4968121 ~ 4977890 (+) True AMCG00019127
AMCG00019131 mRNA downstream 377857 5125606 ~ 5139208 (+) True AMCG00019131
AMCG00019133 mRNA downstream 392811 5140560 ~ 5142326 (+) True AMCG00019133
TU39314 other upstream 1536865 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 1536865 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 1651122 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 2599985 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 2672752 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 3597706 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 3597706 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 4513625 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 4581730 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile