RNA id: TU39654


Basic Information

Item Value
RNA id TU39654
length 5077
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G31690
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5177934 ~ 5183039 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcgtaattatattttaaaatggtaggTTCAGGTATAACCAGGagacacaaaatgaaacaaaaactggagtaatgcattttagtttgatttatttgtgtacagTAGACGGGTTTCTGACTGCTTTTATTcctattgaaaaaacaacaaaaggccTAGTTGGTGGAGACTATGTCCGTATCACAAACTGATTGCTGCTGTGATGCAGTATTAGTGATGCAATTAGTACAGGATCATCATTACAGAATTTCACTCTGAATGTTCTGAACCTCCTTAGATGCCCAGTTTCCACTTCCACCCGACATTTCTCGTCATGTTATCAGCAATATACTGTTACGGTAGTATCAGTTTGGGCTACATATTACTTTCACATAGACACTTGGAGAATTGAAACTCTGGGAAAGTTTTTGAATCCCTTGACAGTCTGCAGTCTATTCATCCATTCTGGGCAGACCGCTCAAACATCCCCTTTTTCACTTGCATGTGAAAACAGAAAATCGAATTTCCACTCTGGATTCTCTGCAGAATCCTAATCACTCTTTTCccaaagcaacacaaaaaaattgttttgtttgaacaaaGTCAAATCGCACAGGAGATGTTACAAATTGAAATCAATAACGAAcctcaaagttgttgtttttctcctgtgATGACCATTTAAagtaatgaacatttaaaaggacattattataaaatcaatcttaatcaaaataaataagacctATATACGGGGTTCTGTTAATGTGTCTTGTAAGCTGAAGCAAAGGTGAATATTAACTTGTGTCAAGAGACCAAAACCACCCGTCACACCTCAGAATTAATACAATGCCTCTTGACCTGGACAGAGCATTCAGGTAACTCAAATAAGGctgtaatgttattaaaattaagtaCTTGAGGTTCTGGTTCAAGTGTTTTCTCCTAGCAGAGCTTCGGCTGAAAACAGATACTGGAAAGGCTGCAGATACTTTAATTAAGGTGCTTGACAACAGTAAAGCACGAATTGCAATATTTCATCCTCTCTCCGTGAACGAGTCTTACAAATGGTTGTGAAGATCCGATcgatttgttttttgcaattgcTGTTTTACAAGAAACCCTTCATGACTTTAAACTTGAGACACActattaatatgtattacattaatttaggTTTGGAATAATATCACTCTGGAAACAGTTGATCTAATTGGTCTCGGCTTCAAAAGACACACAGCAGTGAGAGGCAACTGATAAGGTCATactttattgattaaaaataatgaggGAAACATGCACTGAAATCCAAAACCAAAaaccacaaaagaaaagaaaaagaaactaatAAAAACTGAGATAGTTTACAGCGTTGTGTTATAAACTACAATAAACAAAGTCATATGCCAAGGTAATCCATCGCATTGctgtttctcttttaattacAGGTGATTGATGACAattaaggagagagagaaaactaaataataaaacaaaatcaaaaatcatGCTGTTGGAGTTGCGGTTCAATCCAGAACGCACCATTCTACACTCCGTCCGAAAAGTATGTGAATGTCACGGATAAACACACAGGGGAATGGCACTAAATACATAAGGGTTTGGGTATACTTGACAAGTGTCGTGTTACCGGCCCCGCAGCAGTAATACTAATTAAATACTACACATGTTCATGCTTTTGTTGTCTGAGCCAAGCCAACATGAAAATGCCCCAgcaacaaaaaatgtgtttggaaaACTGGGTAACATTTGCGTTTAAAACGATCTATTAAACACAGTTTAAGGTGTATTTTCTGGTCGGACAATTTTGGCGAATATAATGATCGGAATATCAAAATATGATATAGTGGCATTgtcaggatttgtttttaatatatatttatatatatattggattcAAGTACTGTTTTCGGGTAAATTGCTTGGGCATCTATAGTTGAATTTTGTAAAAGAAcctattttaaagaaatttatatttaacattttcattttttttgtatttttctgctgCAAATAACTACCCTATATTTCTCACTGGGCTTTACCATGATTTCACCTTAAACATCATTAACCAATGTACAGAAGATGGCAATTAATTCCTCCCACGTGTGAATAGTGAAAATGACTCCACAAGGATAAATAACAGGGGGGAGAGTGCACAGTGTTCGCCCTGGGACGGGTTTGGAGTTTTTATTGAATCGGTGATATTTACAACATGAATCGCTAAAGCAGCACTGCATTGTACCAAACGTAGGATGCAGCTGCTAAGAAGTAGTGCAGGAATATGTTTGCAATGGCATCTTTAGTTATGTTGGCTGAACTGAATAAACAGACCAAACATGTACAATTTAGGGTAGTTTTCATTTAGAAACCGATAAAAAATCGAAGCTGTAACGCTTGAAAGGAAACGCTGAACAAATCTCTTAGACTGGGGTGAGAGGTGCTGCAGCCAGACCTCTGAGACCCGATCGACACTTTGATTTGAGCTCAATTACACACTTGTACCCCATCACATAGAGCAGAAAGTGGCTTTGACACTAGATCAAAATGTAAcaggatacaggtttgtactttgttaTTTGCAGGGAGATCAATGTTTGGATTTGGTCTAGACCCAAGTTCACTGCTATACAGATAAAGCACAGGCAGGGGTCTATAATCTCAATTGTGAGTATGGACTATTGTACCGGAGCCAAACTGAATCAAAGGGGTACAGGCAGTGTGAACAGTGACAAGATCTCAATCTGATTTTAATGAAAGTTCTCTCCTTGGCCCCTTCAATGACACTATTCTGATGATTTTGAGGGTTTATTTGCGTCTTCTGTAATGTTCAAActggtattaaaaaaatgaacacaatccAAATCATTTCCTGGTCTTATTCATCCTAAATATCATGTATAGATACTCGATGGCActgcaaaaacattttgcactCGTGCTCAGCGTGAGAATCCGATGCTGAAAGTGTTCATGCAACATAGTTacattatgcatgtatttaagaTGAAATAAGCTTGCTTTTAAAccctcatttaaaaaaaagaacaaacccTCGGTGACAGAAAGGACAGCAATTTCTAGTGAGCGACACctgctgtggaagaaaaacaaaaacgctaCAACATAAAAAGGGTTTTGTTATGTTCCTGTTTCCTTACACagcactgattttttttttcttcctaagATACAAAGGCCAACTGTGAAAACAcccaatataataataataataataaaaaaaaaaaatcaacaccaaactttattatttacatactaTAGTAAAGTTATTAAATCAAGTATATGCAGTTTTTAATCCTCGTTCGCTAATATGCactactttcattttttttttgttttcgaaAAATTATTCCAAATCAAAGTCACTGCTAACACCCACATACAAACTAATGCATGAATGATCGCTCATGTGGCTCCAGTTACACGATTAAACTTCATTAAGTGTAATTAACAGAATTCACAAATTCACAGATGTAGAAAGTAGTAATAATCAGAAATGAGAGCACACTGTATAAAGCTGATGTGAGTGTGGAACGATTCAAAGTGTactttctggaaaaaaaacatgtcaataaATGGTTATATATGATGTTATTACACAAACCACAAGCTTTTCTGAAATTATCTTCACTCGTGAGTTTGTGAAACGGACCAAGAAACAGCCGATTAAAGGAACAGTCGTAGTGCGCTGAAAGTCGGAAGTGAGTCAGTTTGTACCTGTTGATATTGAAAAAGTGTAGGAGTGTAAAATGACCTGGAAGCTCCTCACTCGGTTCTGAATTCGGTGATGAAACAATCGTGTTTTTCGGTGCCAGTGCATTAAGGAGTGTCTCGCCAGTGTTGGGGCAGGACAGGACAGGTGATCGCACACAAACTGTACCTGTACTGCtctacagtaaaataataagcCAGGACCTCGGGGAACAGTCAGTGCGGCGCCATGTCTTTATCCTCAGAGTCCTTACACTGACTGAGGACAGGAGACAGCGGGCCAGCGACAACAGTGGGCGCCCAAATCAAAGCGCACTTACGGGAAAGGCCCGTGAGGTCTTAAAGAAAGGCAGCCTCGCGTTGTCTAGGTGGTTATAGAGGTGAGATGTGAAGGACTGTGAGACGTATCCCCAAATACCTGTATCCCAAAAGCCATTTAGAAAGAAAAGTGAATTAACTGCATTTAATCCCAGCACCCCCCATTCCCAACGGGGAAGCCCTCGGACACGCACTCACGGCAAATGCGTTCAGAGGAGattatgaagaagaaaacagtTCGATACTGAAAAGGCTGATTTGTGTGTCTAGTCTAACATTGTGGCACAAGTACATTGCCAACCGAAATTCGGTCAGAGAGGCATGAAGCACAGTAACTCAGTTAGACGTCACACCGGCGCTCATCACAATAACATTGGTGTTACTTACTGGTGCCTTGTTATTTAAATATCGTTCGTTAATGGAAAGATTTAAGTTAGATCGACGGTAGGACTTTCAAATTAGGTCTAACTAAAGCTGTCCCAAGTCCCCAAGGTGTGCATCTAAAGGAAAGTTTAATATTAGTAACTGAAACCACATTCAATCTACAATTAAAAGTCATGACTATAGTGGGGACAACCCCCCATTTATTCAGTAGTACTGTTTAAGATAAGGCATTGTTACATTACCAGGACTTGCAGGATTAACGTCGAATTGTGCAAATGCAGGTTTTaaattagaagaagaaaagaaagaaaaagaaataatcGCACGGGTGGATGTTGATGATTGCTTCATTccaaacatacatacactgtaAACGTTTTAGTGTGATTCCTATAGGCTGCATTTTAAACGCACGGTCCTAGTTACAAAGCGATGTTCGAGTCCTATGGGGTGACGGCATCTTATTTGTCTTTGGCAGTAGTGGTTTCATTAGGCCAATGAAAGTAGAGAATACGCACAAGTGTGCACTTCGgtttgtttctcttgtttaGGCAAGTCAGGTCCCTGGTGGTTCGTACTACAGTTTAACTAATGCTGAGCTGTGCAAATCCCATAAGTTTAACATCGTCTGGAATTTCAGAGCCTTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39620 lncRNA upstream 50305 5093881 ~ 5127629 (+) True G31663
TU39572 lncRNA upstream 147839 4972972 ~ 5030095 (+) True G31622
TU39503 lncRNA upstream 430185 4747548 ~ 4747749 (+) True G31566
TU39435 lncRNA upstream 809731 4366957 ~ 4368203 (+) False AMCG00019111
TU39393 lncRNA upstream 1313330 3864189 ~ 3864604 (+) True G31461
TU39782 lncRNA downstream 389733 5572772 ~ 5577699 (+) True G31799
TU39824 lncRNA downstream 566778 5749817 ~ 5750063 (+) True G31820
TU39841 lncRNA downstream 747665 5930704 ~ 5931941 (+) False AMCG00019154
TU39884 lncRNA downstream 981692 6164731 ~ 6167316 (+) True G31867
TU39889 lncRNA downstream 1004353 6187392 ~ 6187723 (+) True G31872
AMCG00019132 mRNA upstream 25917 5147715 ~ 5152017 (+) True AMCG00019132
AMCG00019133 mRNA upstream 35608 5140560 ~ 5142326 (+) True AMCG00019133
AMCG00019131 mRNA upstream 38726 5125606 ~ 5139208 (+) True AMCG00019131
AMCG00019127 mRNA upstream 200044 4968121 ~ 4977890 (+) True AMCG00019127
AMCG00019126 mRNA upstream 214701 4950027 ~ 4963233 (+) True AMCG00019126
AMCG00019141 mRNA downstream 98259 5281298 ~ 5305514 (+) True AMCG00019141
AMCG00019140 mRNA downstream 123374 5306413 ~ 5318056 (+) True AMCG00019140
AMCG00019139 mRNA downstream 137234 5320273 ~ 5325949 (+) True AMCG00019139
AMCG00019143 mRNA downstream 183427 5366466 ~ 5390362 (+) True AMCG00019143
AMCG00019146 mRNA downstream 350641 5533680 ~ 5542935 (+) True AMCG00019146
TU39314 other upstream 1967251 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 1967251 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 2081508 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 3030371 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 2237462 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 3162416 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 3162416 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 4078335 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 4146440 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile