RNA id: TU39751


Basic Information

Item Value
RNA id TU39751
length 957
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G31774
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5418996 ~ 5511930 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttttccccNNTTTCCTACTTCATTTTGAAAAGTGTTGATACCCATGTTGTCCGGAAGGTGTTTCTTCCACAGCGTACAGTAAAGCTCTGTCTACAGCATTTTCCCTTCAAGTgttatacacatacagtacttaACCGAttcacagtatatatttataacatagTCAACTATTCCATACCAGTCTGACAGCCCTGTGTTCTGCATTGTAACTGTTCTGGATCCTGTCAGGTCCCTGTAGCCCTAGTGGACTTGTTTTATACACAACGCATTCACATGGTgttttaacacacacatttgttatgCACAATGAGTTTAATGTTAGTCGAATAGTTAATTTCTGTCCACCTGTAACATGTTCTAATTGTTTTTGAGATCGTCAGTATTAAGTTCCATGTCTGATCTAGAGCACcaaaaatactattatttttattttctgtccccTGACCttaatttattgatgtataattCCAAACGGGTCTTGGCTGAAGTGTTCAGAAGTTCATAtagtattacttttattttctggagtgttttttcatttcttttcatGCAGCACCATGCCACTATGAGTTACCCATTAAACGGGGAACGATGGTGGCGTGTGACATTGTACAGAGGAAAACGGCTCTTTTATCACTGTTCTTGCCCATTCTACTAGTGTTCATCATTTATCCAgataagtgtttttctttggttGTTTCACACATGAACAGTTTTGGGATCCAGCGCAGCAGAGTCTGATCTGTAGAAGAGCGTTACTGTGCCTCTCGTTTGCAGCATATTTTCAGTGAAGTGTTACACGGTTTGTGACAGATTATTTTTCAGGCAATGACATGTCATATTAAAGcaccttttttaaaaacaggattttTAGGGTTTTCTATGACTAATAACAATTGACTGTACTGCATAAACTGCTGAAATAAACACTAAATTAGCTATGTGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39592 lncRNA downstream 432612 4941059 ~ 4986384 (-) True AMCG00019128
TU39509 lncRNA downstream 740929 4677643 ~ 4678067 (-) True G31572
TU39494 lncRNA downstream 811139 4607563 ~ 4607857 (-) True G31558
TU39459 lncRNA downstream 1053595 4365162 ~ 4365401 (-) True G31526
TU39458 lncRNA downstream 1053952 4364196 ~ 4365044 (-) True G31525
TU39766 lncRNA upstream 28190 5540120 ~ 5540948 (-) True G31784
TU39790 lncRNA upstream 60867 5572797 ~ 5574265 (-) True G31803
TU39830 lncRNA upstream 237957 5749887 ~ 5752086 (-) True G31825
TU39831 lncRNA upstream 272838 5784768 ~ 5802915 (-) True G31826
TU39835 lncRNA upstream 305146 5817076 ~ 5817433 (-) True G31829
AMCG00019144 mRNA downstream 13290 5391065 ~ 5405706 (-) True AMCG00019144
AMCG00019142 mRNA downstream 69482 5326041 ~ 5349514 (-) True AMCG00019142
AMCG00019136 mRNA downstream 140280 5269238 ~ 5278716 (-) True AMCG00019136
AMCG00019135 mRNA downstream 151352 5261715 ~ 5267644 (-) True AMCG00019135
AMCG00019138 mRNA downstream 175282 5236401 ~ 5243714 (-) True AMCG00019138
AMCG00019149 mRNA upstream 70298 5582228 ~ 5588342 (-) True AMCG00019149
AMCG00019150 mRNA upstream 123772 5635702 ~ 5671986 (-) True AMCG00019150
AMCG00019152 mRNA upstream 243475 5755405 ~ 5773697 (-) True AMCG00019152
AMCG00019153 mRNA upstream 435959 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019155 mRNA upstream 614263 6126193 ~ 6145464 (-) True AMCG00019155
TU39603 other downstream 483000 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 3240346 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 3335725 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 3335725 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 3708453 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 8150186 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 8979961 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 8979961 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 9439912 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 10180552 15692482 ~ 15721452 (-) True G33381

Expression Profile