RNA id: TU39782


Basic Information

Item Value
RNA id TU39782
length 4928
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G31799
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5572772 ~ 5577699 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTTggaataatatatatctatattgtttaatattgaaAGGAATCATTTCTCTCTTTCCTGTGTTACAGACACTATACACTAggcaatacaataaatgacataaaatATAGACTAATAGTATTAGCACCTCTAGACACAATCGtccttgtattgtttttattctccgTTTATATAACCACAACAGCTACGGCCTACATGTAGTCTATGTACACGCGCGTTAACTAAGACATTGTGTTTACTTAGTAAAATATAGAATCAGCATACAGAGacctgacacacacatatgatTGACTTACTAAATCAGGATCAGGAGGGCGGCATGGGGGCAAGGCTTGAAATTACCAATTGAATCCCCTCAGGCTACCAAAATActggtttattttaagattttgatTGAAGTCAGTAGTACTGAAGCCTAGGTGACCATgaaagtgcttttctttttttcttttcttctgtttcccCTTAAATAAACTTAACACTGAATGAAAGTGACCATTATGCAATCTTAAAAGTGCACTAAACATTTAAAGTGCCTAGCTCACTTGTTTAAACATACGTCTGGACCAAATCAACATTTTGAGGAACCTGCCAATCTCAGATTATAATTACGGTATTCAATGGCAGCTTATTGTAGAGGCATCTTCCTGCTATCCAACACAAACGTGCCCTCAGCTACTGTGCCGTGTGTTGTGAGTGGCAGCcaggtcaaagctttgatttggtcaGGGCTTTAATTCAATCTCTATTGGAATTCCTCTTTCACACATCTGGCGGTCGACTGattacaagcaaaaacaaacaaacaaaaacaacacaaaaacaatgttgtaGTACGCAAACTCATCCGGTTCACAATTTCCTCAGCCAGCTtttgatatatattgtgtttcttCTATTATATAAACATGTCTCCGTCAAGTCACAACCCTTTATATACAGGTTAGCTTTATATAATTCTGGGACACAAGTACAGCCATGATAAAAACCCAGTTGCTTGGACTGGTTTaaccattaaacaaacaaacaaacaaacaaaacaacaaaataaaattattttggtTTGGGTACAAAGGCCACAGAAGTCAGTCACACAGGGTATAAACCCCAACTAGCAGCAAAAACCCAAGACACAAATTTAAACACCAGTTACCATATAAAACATCCCATGTAAACTTCTCACAGGTATAGGCACAAAATGCTATTGttttccaataaaacaaaataacatttctttGTTCCTTCTTTCACAAAAAAATGCACTTGCTATTGTTCAAAAATGTCTCTACACTGTACAGGTCAGTCCACTTGAATAACAACAGACACAGGATAACTGGGTGTTTAACTCTGAAATTATATATGCTTAATAaggaattattaataataaatgtctattttttaagCGTATTTCTGTAACCAAATTATTAGTAAaatccacaaacaaaaaacaattgttaaatttcctttaaaaataaaataaaaactggaatttcaatacatgtatttttcatatatatttatatatatatattttttttttttacagatcaCATACTTTCCCTCTACTTTTTTGCTGACAGTAGCAGTGTTAGCAAAACTTTAcatcaatgttttgtcacattttatCAAACACACAAGTCTAAGACAAGTCATAGGAAGATCGTTAGAAACCCTGTTTACAAAAATGTGACCGCTTCTCCAAACTATTCAGGGCCAGAAAAGGACAAGGTTGTATAAAAGCATTAACAAAGTACAAGTAAGCTTCaagtgcattaatttatttgtttaaccatCCAGCtttgtgaaaaaatgaaaaagaaaaaatgaaaagaaaaaaggtgagAGCTATAGCTTTAGGAGTTTCTTAAAGACCAAGGTCCtacctgaaaacaaacaaataaacagtaattagCCGACACTAATATGTCCACTCGGATCACAATACAACACCTCTGGTAACGTTTCTGCTCGTGTAACGACACCTCCTCATTACTGAATACGATTACTTTCACTGACCATAAAAGGACAACAGATCTAACACATATATTATTGTTGGATAATAAAAAGAAGGAAGcctaattcattttcatttatttgtagcAGACTATAAAAAAGCACTCCTATAGAAGGAGGGGAATTCCTTTAAGGGAtgaattggaaatgttttttttctgttgttgtttgtttaatatgacTGGAAAATGTTCTTAGTCTAAACTGTCTGACTCAGGAAAGCTTTGAAAGTTCTTCATCTGAAGActcattatttcaaattgtgcTAGAATGGGAGGTGTTTTTTGCAGTATATATTAAAGTGCATTTGGAGCTAACCTAAGATCACCAAAAGACCACTGGGAATGATTTTAACTGACCGCAGAAATAAACAGTTCAAAAGACGTTCTGCTCTgcaattgattatttaaattgtcattcccagtatcataACAGTAAAGgagataaaatgtaaaattcttcaatgaaaaataatttgttagtAAGTACATATGTGTGGTTTGAAATTATCACTGCCATTTACCTTATACAAGATTGTGTAACaatggggagaaaaacaaatgttgtttctacatatattttaaagattaatctGTTACTTTATAGTtcaaattgttatttataattaaaatacagcataCACTATTTGAAGTGCATGTCAATAAAGCAAATTCTCCAGCATTTATTGTTATTGAGACGGCGGCGCTAAGCAGCTTTTTGTGGGCCTAGATAATGTGTCACCACGCATCTGTAACTCCTCATTcccaaagagaaaaataatgtgctttttttatagCACCCCAAACCGGAGAACTATCATATAGCCAAggctcaaacaaacaaagaaaaacagaaaacatgataATAGCAGTTTTGGACTTCAATTCTGTTGTGTGCATGATTCTCGTTGTAGCTCAGTTTTAACACATGGGTTTGGTTCTTGAGGACCATCAGCTATTCGTCTACACAATACTCCTAGCATAACTTGCTCAGATGACATTCACTGCCAAAGACCACAATCCTCTCTGTTTTAGGTCTTCTCTCATCCTAAttgcacatatttaaatatatatatttgtgaaaagCAACAACATAAGTTCTAGAATGCTATATGCACTACATCACACTTAAGATCTGCTACATAGAAGGACAAATCAGAGATGAGAAAAGTTTGCCACCTCTACAActttgatttgtataatttgtgggtttgtttgtttgtttgttttacataagaataactttcTTTAAATTAACCTAACAGCTTAAAATGGGACACTGAGTCAGGTTCCATCCAACTCATTGTAATATACCTGatggcacaaaacaaaactaacaaatagcTTAGGAGAGCAATGGGAATTAATTCTGCATGTGGAGCTCATGGGGGCGATGTTGCTCTACAAGATAAAGTGCATCCACCCCTGTAGCACTGGCGTGTTGTAGAGTCCAACCATCGGTGCCCAGACATCCTCACAGTCGCACATGCCAGCTGTGGTGAACATTGTAGCACATCTTCTTCTCTCCACCAAGGGATTTTCAAAAAGATTCAAAGGCATAACATCCCCAGACAACAGCCACAGCACTTCAGACCAGACATCCACATCCACGCAGCCatcaggagaaaacaaaactgaagtaTTTCCTTAAAATATTGATATCAATCCACAGTTACAGATCTCTTACTCCTGCAGCTGCAATCACATTTAAGCTGCTGTAGGGGGCCCCATTTCTCCattatattattactactacagtATAAGGTGCATGAGCATTTTTTAACTAACTTATTACAGCTTATTACTGAAAGAAAAGCTTATCCACAACTCTCCAAGCCTTTCAGTaccaaaatacaatacaataacacattCACTATTCTCTTAGAACTATGTAAACAAGGGGGAAACAGTTTGACTGAAGATAATTGCGTTTCATTCATATACACAAAAGCATATGAACACATGTGTGCATGTAAGcatgtatgtacacacatactaacacaagcacacacacccctacaCTTGTGTGTAAATACTGCACCACAGATCCAGTACATGAGGGCTTTTGCGTCACCCTCCAAACAAACACTTTTGAAAGGAAGCGTAATGTCTTTGAATTTAGCATCCTCTGAAACACGAAACCCAATTACGAACTCGGGATTAAAACATTGCATGTGTGAAGCTTATCCTTGAACCTCATTATTACGTTTGTCATAAAAGTGCATGTGTCTCAAGAAAATTGCACTTATTTCTGGGGAGTCTGTCCCCATTGCACAGGCTTTTACAGTAActacacaaacattttcagcCTGCGAGACGCTAACAAGGTACCATACCAGGTTTAAGGAGCCCTGTTACAGGGTCTGGGTTCTGTCCTTTTAAGACTGTTGTATTTCAATATAAGTGACTTGTAGTGTGATACAATCATATCCACTCACCAAACAGTCACCGCAGCTGTAATGTTTAAGCAGAGCTTTCTTTGCTCTGTGCAGAACACCAAAATGGTTTCAGAATTAACTGCAACTTACTGTACAAAACAAAGAGATAAAACTGCTTCATAATGCACCTGTGCTGAGCACATTTGTTATAGGTGGTAACAAATATCAAACAACTTTTTGCTATTCGAATtactataaaaaatattgtaaatggtATTTGGACAGAAATAGTTTCTAGAAAGACACTAAGAACACTATAACATTGGCAGATCTATACACTACATTTGAGTGGATGCAGCTTTAGTGAACCAGTCTGCACACATTTCCTTTTATCAATACCATGCTAAAGTCTCTGGATCATAAATCATATCAAAATACAAGTCACAAGGCAGactcacaattaaaaaaaaaaaaaatgttttgcatcatGATTGGAAACTAAAGTTTGATGTAACTTATAACACCAACAGGAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39654 lncRNA upstream 389733 5177934 ~ 5183039 (+) True G31690
TU39620 lncRNA upstream 445143 5093881 ~ 5127629 (+) True G31663
TU39572 lncRNA upstream 542677 4972972 ~ 5030095 (+) True G31622
TU39503 lncRNA upstream 825023 4747548 ~ 4747749 (+) True G31566
TU39435 lncRNA upstream 1204569 4366957 ~ 4368203 (+) False AMCG00019111
TU39824 lncRNA downstream 172118 5749817 ~ 5750063 (+) True G31820
TU39841 lncRNA downstream 353005 5930704 ~ 5931941 (+) False AMCG00019154
TU39884 lncRNA downstream 587032 6164731 ~ 6167316 (+) True G31867
TU39889 lncRNA downstream 609693 6187392 ~ 6187723 (+) True G31872
TU39890 lncRNA downstream 610736 6188435 ~ 6188700 (+) True G31873
AMCG00019148 mRNA upstream 2236 5566296 ~ 5570536 (+) True AMCG00019148
AMCG00019147 mRNA upstream 9117 5549593 ~ 5563655 (+) True AMCG00019147
AMCG00019146 mRNA upstream 29837 5533680 ~ 5542935 (+) True AMCG00019146
AMCG00019143 mRNA upstream 182410 5366466 ~ 5390362 (+) True AMCG00019143
AMCG00019139 mRNA upstream 246823 5320273 ~ 5325949 (+) True AMCG00019139
AMCG00019151 mRNA downstream 96278 5673977 ~ 5685061 (+) True AMCG00019151
AMCG00019154 mRNA downstream 353009 5930708 ~ 5939597 (+) True AMCG00019154
AMCG00019156 mRNA downstream 391743 5969442 ~ 5980521 (+) True AMCG00019156
AMCG00019159 mRNA downstream 734049 6311748 ~ 6312120 (+) True AMCG00019159
AMCG00019160 mRNA downstream 777561 6355260 ~ 6380345 (+) True AMCG00019160
TU39314 other upstream 2362089 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 2362089 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 2476346 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 3425209 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 1842802 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 2767756 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 2767756 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 3683675 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 3751780 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile