RNA id: TU39839


Basic Information

Item Value
RNA id TU39839
length 308
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G31833
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5923714 ~ 5927593 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaTGTCCAACAGAATGGGATGATATACGCTGCTGGCCCAGGGCTGATGTGGGCCACAGCATCAGCGTGACTTGCTCTGAAGTCTTTCAGCACTTCCCAACTAAAAAAGGGTTCATCTTTAGAAATTGTTCGAGTGAGGGCTGGACAGAACCTTACCCTCCATATCCAGAGGCCTGTGGATTTGCCGAAGACCCAGAACCTGAAATTGAGAAAACATACTATTCCACATTTAAACATGTCTACACTGCAGGCTATTCCACATCATTGATTTCATTAATAACCGCAATTATTATCTTCACTGCATTCAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39837 lncRNA downstream 21077 5902372 ~ 5902637 (-) True G31831
TU39835 lncRNA downstream 106281 5817076 ~ 5817433 (-) True G31829
TU39831 lncRNA downstream 120799 5784768 ~ 5802915 (-) True G31826
TU39830 lncRNA downstream 171628 5749887 ~ 5752086 (-) True G31825
TU39790 lncRNA downstream 349449 5572797 ~ 5574265 (-) True G31803
TU39861 lncRNA upstream 36671 5964264 ~ 5986796 (-) True G31845
TU39892 lncRNA upstream 236396 6163989 ~ 6164537 (-) True G31875
TU39895 lncRNA upstream 335044 6262637 ~ 6262838 (-) True G31878
TU39899 lncRNA upstream 337098 6264691 ~ 6265136 (-) True G31882
TU39965 lncRNA upstream 753032 6680625 ~ 6684051 (-) False AMCG00019165
AMCG00019152 mRNA downstream 150017 5755405 ~ 5773697 (-) True AMCG00019152
AMCG00019150 mRNA downstream 251728 5635702 ~ 5671986 (-) True AMCG00019150
AMCG00019149 mRNA downstream 335372 5582228 ~ 5588342 (-) True AMCG00019149
AMCG00019145 mRNA downstream 487594 5419981 ~ 5436120 (-) True AMCG00019145
AMCG00019144 mRNA downstream 518008 5391065 ~ 5405706 (-) True AMCG00019144
AMCG00019153 mRNA upstream 20296 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019155 mRNA upstream 198600 6126193 ~ 6145464 (-) True AMCG00019155
AMCG00019158 mRNA upstream 230272 6157865 ~ 6161502 (-) True AMCG00019158
AMCG00019157 mRNA upstream 237590 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019161 mRNA upstream 506919 6434512 ~ 6451611 (-) True AMCG00019161
TU39603 other downstream 987718 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 3745064 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 3840443 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 3840443 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4213171 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 7734523 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 8564298 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 8564298 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 9024249 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9764889 15692482 ~ 15721452 (-) True G33381

Expression Profile