RNA id: TU39884


Basic Information

Item Value
RNA id TU39884
length 2586
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G31867
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6164731 ~ 6167316 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGACAATATACAAACAGCAAGGTTATGACAACAAATAGCCAGAAataaatgtaggcctatatgttgtggcaaatattaaatacaatctgcttaatttaaatatatttttatcgGTCTATCAATACCGATTTGCCTTCCCATTCcctcttcaaaacaaaacaaaacacaaaaacacgtGTTTAATTAAGGAATTAGGATTTCCTTGCTTTTTGATCGGTTTACAAAACAtctttgctgtgtttgtgttgcgcTCTCACACAGGATGCATATGTAATCATAATGGACTACATCACGTTTTTGCTTATCTTACTTCCACTTACTGATTGTAatgaatgtactgtattgtaacTCGTTTATTTGAGAAATTTACACAAatcccacactgcactgtacctgCATGTGGAGGGACGCTcaatattgaataaaacaaaaacacaaaccggTCTGAACTTCACATTGTGCtcacaaagcatgtttttattcaCAGACTTCAGCAGCACATGTTTTTCTTGGTATTGAATTAcagtatacattatattaattcatattttgggAATAAACACTTATTATAGCTGCAGAAAGCAGAAAATCCCATGAACTTTGCAAAGAGGCACAACTTGCAGCCACTATGATGGGAGAAGCCAGCGAGACATTTCCAATATACTGCTTATTCTGTTGCCCATCTGTGCAGTTACTCTGCTATATAAGCTATATAAGAGCAGCTTCTCTCACTTTAAAAGAAGCCAAAAGACAACGGTTGATGCGAGTCATTGATACCCAACACttaaggtatatatatatatatagtgctgaGAGGAGCGTGGTCACTTGATCACATAAGATCAGTTCCAGGTGAACCATCATCAGATGATCTCTATACACAGCATGGCAAGGTAGTCTGTAAACTATTTCTGAACCAAACACATTTCACCCATCAACTGCAATAGGACATAGATGTTCCCTACGTTCACTGTTTCTGGTGAGGTCGTGTTTTTCACAACTTACAGACAATATTTATTCATGCCTGTTGCGATCTTTCCACCTGTTCATCAATCTGTGTGTGCAGTTCAAGCCGGTGGAGGTCACAGCTGGTGGCCTACAACATAATGTGTGAACTCTGCGTGAGACTTGAAGTGCCTTAAAGAAAGAGCACTGCCTGCATGCAAATGGTGATCTACTCCAATACAGGCCTTGTCATGAAAGACAGCGCCACAACTCACACTGTgtgcaatgcaaacaaaacagaagaggTTCCTGGTGTTACAATTCAATATCTTGCATCAGAAATGGTTTGTAATCCTGATCTGATCTACACAAAGTTATAGTTATGGATGccttgtaaaaaacaaaaagctacaCAAAGTACTGAACCGATTCCTACTCTGTTAGTGTTATGGATGGTTCCAGAACATTCATTTGGTGTCTATTTACTTATGTGAAGCCTATCAGATTTACTATTCTCACACGTGATGCTTagtctttgtttctttattccCACATTTAGGActtaatgcttttcttttctctttttatttacagcCCAGTATTCAAAGACATTGCTGAGATGCTGGGAGGGATTTCCAACAACATCTTGGCAACCATACCTCAATAACGACCAATTCCTCCTCATAGTGCCATATATTTCCTTTTATCTGTGACTTCACTAACATGAAGAGGATACGAAGCTGTTGCAGTCAAAAATTCAAAGTGTCCTCACAGTGAACCTGCTGGCGTTACATAAAACAAAGTGACAAAGCAAATGCAGGACTTCATGGTATCCTGCTGACCTCACTGACACATGAATCTATGGAACtcatagaaatatataatatgccGTTACTGTaaatagaaagagaaaatagaTTCCCCTGTGGCTGACCCTACTGCAGAGCATTACACAACAATAGGCACAATGTAAACAATGATCCCTGCAGTctttttttcccaaaacaaaagtctgcttttaattaaaatcatataaaataaagtttgaattaaaataatgtatttgaaagtaataaataagaaaataaggtatatatgtaaacataaaTGGATAACAACAAGGCACAATTATAGTAATTCtcaaatactgtacatatacaaactgtttgaaaaataataattaacggTTTGGACACATTTCTGAAAGGGTCACAGAGTGGCACAGCATCTTGATTGATTATTTACCCCTGTGTGGGCGGGAAAGAAGGATACTAATTCAGCTGgtaaaaaaagacagataaaCCCTAAAAACACAGTCAGTAGGAAGAATTCATCCCTTTCTCATCAAGCGAACCAGATTCCCAAATCATAAAGactgaatacatacattagaATGATTACAGActacatgatgatgatgacaataataatacgcTTATtcgtataaaaataaataaattaaagcataggGTTCAATGTCTTAGCCAGCAGTGTTTCCGGTTTCATTTCTTATCTGTCAGGTTTGTCCCAAAGATGACATACGAGCCAATTGATGTCGGTCCGTTTCTCTGCTCGGGGGTCACAATTACGTCAAAGAATCGGTTCGCTGTCATTCCAGTCGACCATGGCGCCTTTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39841 lncRNA upstream 232790 5930704 ~ 5931941 (+) False AMCG00019154
TU39824 lncRNA upstream 414668 5749817 ~ 5750063 (+) True G31820
TU39782 lncRNA upstream 587032 5572772 ~ 5577699 (+) True G31799
TU39654 lncRNA upstream 981692 5177934 ~ 5183039 (+) True G31690
TU39620 lncRNA upstream 1037102 5093881 ~ 5127629 (+) True G31663
TU39889 lncRNA downstream 20076 6187392 ~ 6187723 (+) True G31872
TU39890 lncRNA downstream 21119 6188435 ~ 6188700 (+) True G31873
TU39891 lncRNA downstream 21993 6189309 ~ 6189552 (+) True G31874
TU39894 lncRNA downstream 95321 6262637 ~ 6262840 (+) True G31877
TU39896 lncRNA downstream 95695 6263011 ~ 6263282 (+) True G31879
AMCG00019156 mRNA upstream 184210 5969442 ~ 5980521 (+) True AMCG00019156
AMCG00019154 mRNA upstream 225134 5930708 ~ 5939597 (+) True AMCG00019154
AMCG00019151 mRNA upstream 479670 5673977 ~ 5685061 (+) True AMCG00019151
AMCG00019148 mRNA upstream 594195 5566296 ~ 5570536 (+) True AMCG00019148
AMCG00019147 mRNA upstream 601076 5549593 ~ 5563655 (+) True AMCG00019147
AMCG00019159 mRNA downstream 144432 6311748 ~ 6312120 (+) True AMCG00019159
AMCG00019160 mRNA downstream 187944 6355260 ~ 6380345 (+) True AMCG00019160
AMCG00019162 mRNA downstream 317762 6485078 ~ 6566493 (+) True AMCG00019162
AMCG00019163 mRNA downstream 439656 6606972 ~ 6668145 (+) True AMCG00019163
AMCG00019169 mRNA downstream 522599 6689915 ~ 6691084 (+) True AMCG00019169
TU39314 other upstream 2954048 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 2954048 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 3068305 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 4017168 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 1253185 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 2178139 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 2178139 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 3094058 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 3162163 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile