RNA id: TU39892


Basic Information

Item Value
RNA id TU39892
length 549
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G31875
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6163989 ~ 6164537 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATTCATTGATCATATGTTAAATGGAATCATTTAATCATAACAGTAACACAATTCATGATATAATTAATCACAGTTCAgtccaaataatttaaatattacataatggATTAAGTTTCAGATCAGGCTTCTCAGTGACGTGTCCagcttttaaataactttattttggtATTCCACATCATtctacacatacatatattcatagAATAGGTcggtttaattaaacatgtaataGAAAAACATACTGTTTAACACATTCTTTGATATAACTAATCAATGTACACAATTCCGTTTGATACAAATCCCAGATAAGTGAAGTGTTTCATAATTGGTCAAATCTCAGCCAGGTCTTAAGCTTgtgacaaaatgttaaaatctgtttaaatttcAGAGAACTGAGAACTTCAtttgaaatgataaataaataaataactacaagATTAATTtgtcttcatgtttttttctttttgaagctGTCAACATTAGATCACACATTAAATCATTGTATGGACAttacaggaataaaataaaaataaagaccttTCCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39861 lncRNA downstream 177193 5964264 ~ 5986796 (-) True G31845
TU39839 lncRNA downstream 236396 5923714 ~ 5927593 (-) True G31833
TU39837 lncRNA downstream 261352 5902372 ~ 5902637 (-) True G31831
TU39835 lncRNA downstream 346556 5817076 ~ 5817433 (-) True G31829
TU39831 lncRNA downstream 361074 5784768 ~ 5802915 (-) True G31826
TU39895 lncRNA upstream 98100 6262637 ~ 6262838 (-) True G31878
TU39899 lncRNA upstream 100154 6264691 ~ 6265136 (-) True G31882
TU39965 lncRNA upstream 516088 6680625 ~ 6684051 (-) False AMCG00019165
TU39967 lncRNA upstream 522966 6687503 ~ 6687816 (-) True G31931
TU39968 lncRNA upstream 524323 6688860 ~ 6689516 (-) True G31932
AMCG00019158 mRNA downstream 2487 6157865 ~ 6161502 (-) True AMCG00019158
AMCG00019155 mRNA downstream 18525 6126193 ~ 6145464 (-) True AMCG00019155
AMCG00019153 mRNA downstream 201842 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019152 mRNA downstream 390292 5755405 ~ 5773697 (-) True AMCG00019152
AMCG00019150 mRNA downstream 492003 5635702 ~ 5671986 (-) True AMCG00019150
AMCG00019157 mRNA upstream 646 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019161 mRNA upstream 269975 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019166 mRNA upstream 451113 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019164 mRNA upstream 505416 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019165 mRNA upstream 516163 6680700 ~ 6684301 (-) True AMCG00019165
TU39603 other downstream 1227993 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 3985339 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4080718 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4080718 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4453446 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 7497579 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 8327354 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 8327354 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8787305 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9527945 15692482 ~ 15721452 (-) True G33381

Expression Profile