RNA id: TU39895


Basic Information

Item Value
RNA id TU39895
length 202
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G31878
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6262637 ~ 6262838 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taattacactatgggaggaatagaactagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcactttctccatccaaacaatgtggggaagcaataaaaaaggcaaacaggatgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtaatgttcagactgtacaatgcactagttaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39892 lncRNA downstream 98100 6163989 ~ 6164537 (-) True G31875
TU39861 lncRNA downstream 275841 5964264 ~ 5986796 (-) True G31845
TU39839 lncRNA downstream 335044 5923714 ~ 5927593 (-) True G31833
TU39837 lncRNA downstream 360000 5902372 ~ 5902637 (-) True G31831
TU39835 lncRNA downstream 445204 5817076 ~ 5817433 (-) True G31829
TU39899 lncRNA upstream 1853 6264691 ~ 6265136 (-) True G31882
TU39965 lncRNA upstream 417787 6680625 ~ 6684051 (-) False AMCG00019165
TU39967 lncRNA upstream 424665 6687503 ~ 6687816 (-) True G31931
TU39968 lncRNA upstream 426022 6688860 ~ 6689516 (-) True G31932
TU39969 lncRNA upstream 426998 6689836 ~ 6692303 (-) True G31933
AMCG00019157 mRNA downstream 71426 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019158 mRNA downstream 101135 6157865 ~ 6161502 (-) True AMCG00019158
AMCG00019155 mRNA downstream 117173 6126193 ~ 6145464 (-) True AMCG00019155
AMCG00019153 mRNA downstream 300490 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019152 mRNA downstream 488940 5755405 ~ 5773697 (-) True AMCG00019152
AMCG00019161 mRNA upstream 171674 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019166 mRNA upstream 352812 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019164 mRNA upstream 407115 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019165 mRNA upstream 417862 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019170 mRNA upstream 514566 6777404 ~ 6781144 (-) True AMCG00019170
TU39603 other downstream 1326641 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 4083987 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4179366 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4179366 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4552094 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 7399278 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 8229053 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 8229053 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8689004 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9429644 15692482 ~ 15721452 (-) True G33381

Expression Profile