RNA id: TU39899


Basic Information

Item Value
RNA id TU39899
length 446
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G31882
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6264691 ~ 6265136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaaagacaaatcacttccgtgaccaaatcaaagaccatgggatcgcatatgataacacacaaatcgttaaacaaaaaaggttataaacacattgactacaataccggttagtaagacgaaggtgagtctctcattagtattgttagtcagacattaaataactatgcaggttagtatttatgtcaggtaacttctcgttatatatatatcggtctcatttacgtttaggtgccgagaaagatcctatcattacttgttaccacaatttcccttaactgattattattcaatgattaaggataggcagggccaccaataatctaatgtctattaacttgtgtcaatttcagactaaacagttgaacaggaatgagaagatatttctcagattatatttctaaatttatcaacaaaacagtttaatgcaacacacatttatatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39895 lncRNA downstream 1853 6262637 ~ 6262838 (-) True G31878
TU39892 lncRNA downstream 100154 6163989 ~ 6164537 (-) True G31875
TU39861 lncRNA downstream 277895 5964264 ~ 5986796 (-) True G31845
TU39839 lncRNA downstream 337098 5923714 ~ 5927593 (-) True G31833
TU39837 lncRNA downstream 362054 5902372 ~ 5902637 (-) True G31831
TU39965 lncRNA upstream 415489 6680625 ~ 6684051 (-) False AMCG00019165
TU39967 lncRNA upstream 422367 6687503 ~ 6687816 (-) True G31931
TU39968 lncRNA upstream 423724 6688860 ~ 6689516 (-) True G31932
TU39969 lncRNA upstream 424700 6689836 ~ 6692303 (-) True G31933
TU40037 lncRNA upstream 959453 7224589 ~ 7224997 (-) True G31993
AMCG00019157 mRNA downstream 73480 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019158 mRNA downstream 103189 6157865 ~ 6161502 (-) True AMCG00019158
AMCG00019155 mRNA downstream 119227 6126193 ~ 6145464 (-) True AMCG00019155
AMCG00019153 mRNA downstream 302544 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019152 mRNA downstream 490994 5755405 ~ 5773697 (-) True AMCG00019152
AMCG00019161 mRNA upstream 169376 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019166 mRNA upstream 350514 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019164 mRNA upstream 404817 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019165 mRNA upstream 415564 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019170 mRNA upstream 512268 6777404 ~ 6781144 (-) True AMCG00019170
TU39603 other downstream 1328695 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 4086041 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4181420 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4181420 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4554148 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 7396980 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 8226755 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 8226755 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8686706 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9427346 15692482 ~ 15721452 (-) True G33381

Expression Profile