RNA id: TU39914



Basic Information


Item Value
RNA id TU39914
length 574
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G31894
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6434199 ~ 6436707 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


taCTTTTGAAgtactttaattacatttatacagtttCAGAAACAGTATTATGACACGTTGCATTCGAATTGAGACAAGATGAATATTAATCGAAAAAGGTTCGCTGCCTTTTTCAGTGCTATTCACAGTTGAAGGTACAAATCGGAGAAAAGAATTACAGAAAGCCTAAAGGTTATGTCCCGATATGAGATTTACAGACGTCTTGATGCCCCGATCTATCCTGCCATGATGTGCTTGACAAACGCTTCATAGTTTATGCATCCATTGGCGTCTTCTTGGCCCACCATGAGTTGATCAACCTCATCttctctcattttctctcCCAGTGTGGCCAGCACGTGGCGCAGCTCAGCGCCCATCACTGTGCCGTTCCCCTCCTTATCGAACACCCTCAGTCCCTCCACAAAGTCCTCGAAGGTGCCCCGATCCTTGGCCTTGCAGATGTGTTGGTGCATGGGCAAGAACGTCTCAAAGTCCATCATTTTGGAGTTCATTTCTGTGAACGGGAGTTGGGGGATGTCACAAAAGGTAGCGTTGACCGGTAACAAGGCATAATCATGACATCTCACTTCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39912 lncRNA upstream 16350 6417481 ~ 6417849 (+) True G31893
TU39896 lncRNA upstream 170917 6263011 ~ 6263282 (+) True G31879
TU39894 lncRNA upstream 171359 6262637 ~ 6262840 (+) True G31877
TU39891 lncRNA upstream 244647 6189309 ~ 6189552 (+) True G31874
TU39890 lncRNA upstream 245499 6188435 ~ 6188700 (+) True G31873
TU39947 lncRNA downstream 236909 6672898 ~ 6673177 (+) True G31914
TU39948 lncRNA downstream 242176 6678165 ~ 6678388 (+) True G31915
TU39966 lncRNA downstream 255733 6691722 ~ 6692280 (+) True G31930
TU39986 lncRNA downstream 383776 6819765 ~ 6820035 (+) True G31947
TU40036 lncRNA downstream 788643 7224632 ~ 7224997 (+) True G31992
AMCG00019160 mRNA upstream 53854 6355260 ~ 6380345 (+) True AMCG00019160
AMCG00019159 mRNA upstream 122079 6311748 ~ 6312120 (+) True AMCG00019159
AMCG00019156 mRNA upstream 453678 5969442 ~ 5980521 (+) True AMCG00019156
AMCG00019154 mRNA upstream 494602 5930708 ~ 5939597 (+) True AMCG00019154
AMCG00019151 mRNA upstream 749138 5673977 ~ 5685061 (+) True AMCG00019151
AMCG00019162 mRNA downstream 49089 6485078 ~ 6566493 (+) True AMCG00019162
AMCG00019163 mRNA downstream 170983 6606972 ~ 6668145 (+) True AMCG00019163
AMCG00019169 mRNA downstream 253926 6689915 ~ 6691084 (+) True AMCG00019169
AMCG00019167 mRNA downstream 268368 6704357 ~ 6705892 (+) True AMCG00019167
AMCG00019168 mRNA downstream 333254 6769243 ~ 6770217 (+) True AMCG00019168
TU39314 other upstream 3223516 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 3223516 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 3337773 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 4286636 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 984512 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 1909466 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 1909466 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 2825385 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 2893490 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile