RNA id: TU39968


Basic Information

Item Value
RNA id TU39968
length 657
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G31932
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6688860 ~ 6689516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccatttgacccatcgtgctcatttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttcccaaattgtctcttcagccacatcgctgtagagtttgttcagattgtgacgcctctctgtgtgaagaagcgtctcctgttttctgtcttgaatgccttgaagcctaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctaacatcctgtttgcctcaTGAATGTATCAATATACTTTCCAAAGAGCTATTTTTAGTAGGGTTTACAGTCATATTTTCCTTTACTGCATAATAAAGCAGTAAGCTTCTCAATATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39967 lncRNA downstream 1044 6687503 ~ 6687816 (-) True G31931
TU39965 lncRNA downstream 4809 6680625 ~ 6684051 (-) False AMCG00019165
TU39899 lncRNA downstream 423724 6264691 ~ 6265136 (-) True G31882
TU39895 lncRNA downstream 426022 6262637 ~ 6262838 (-) True G31878
TU39892 lncRNA downstream 524323 6163989 ~ 6164537 (-) True G31875
TU39969 lncRNA upstream 320 6689836 ~ 6692303 (-) True G31933
TU40037 lncRNA upstream 535073 7224589 ~ 7224997 (-) True G31993
TU40042 lncRNA upstream 601335 7290851 ~ 7291130 (-) True G31997
TU40089 lncRNA upstream 726569 7416085 ~ 7419853 (-) True G32037
TU40109 lncRNA upstream 984239 7673755 ~ 7687169 (-) True G32057
AMCG00019165 mRNA downstream 4559 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019164 mRNA downstream 10532 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019166 mRNA downstream 56016 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019161 mRNA downstream 237249 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019157 mRNA downstream 497649 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019170 mRNA upstream 87888 6777404 ~ 6781144 (-) True AMCG00019170
AMCG00019174 mRNA upstream 179998 6869514 ~ 6897553 (-) True AMCG00019174
AMCG00019175 mRNA upstream 254533 6944049 ~ 6963885 (-) True AMCG00019175
AMCG00019176 mRNA upstream 318268 7007784 ~ 7014100 (-) True AMCG00019176
AMCG00019177 mRNA upstream 489110 7178626 ~ 7179255 (-) True AMCG00019177
TU39603 other downstream 1752864 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 4510210 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4605589 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4605589 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4978317 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6972600 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7802375 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7802375 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8262326 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9002966 15692482 ~ 15721452 (-) True G33381

Expression Profile