RNA id: TU39969


Basic Information

Item Value
RNA id TU39969
length 2468
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G31933
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6689836 ~ 6692303 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCTATatgattttattagtatttattactTAGCAgaggcccttatccaggatgacttacaaaacatgagCATTAtacaagtgcaatacagtatacaattacagataaaaacatagTAGCAATTACAAGGTCAAAATTatataagtgcataagaaaatatacagttaatataagtcCTATATCCTAGATTGTGACCTAATAATTGCCatcaagatgtgaagtcatagttaatagctcagggtTCATATGTATGTTGCTGGCTTTCGAATAACTCGATAGTCGCAATAGCATGTATTGACCAGCTGATGTCATTAATGACAGATTTAAAACTATTACAAGCACTTTCATTTGTATAAACTTGCAGTTGACCTTCAAATGCCTACAGATACCGGCCTTTTTTATCCTACACAAGGCCATTCTACCACAGCATTTGTGAGGTTTTTTATGTTAAGATTCTTGTTAAACGTTCCTGTATAAAGGTTTGTTATACAGCTCATGTACACTCAGAACAACAACATCTTTTGTGCAGATTGTGTCATTCATAGTCGTATATCACAAATTGCTTTAACTTGaattacaataaattatattatattttcagatCAATCTTGGAAATATTACACATATGTAAATTAACCATAACTGATGCTTTTTTGATAGTTAGCATTTtgaatttttgtattatatcattataaattaatcttgattaaatgcatattggagtataaattatattaataaagacacacaaagttaagttttattgaattaaaaagcCCAAGTGTACAGTGAGGCCCTTGACACACTGACAATGCTAATACAAAGCAGGGTTGCCAGATTTTCATGAGGAAATAAGCAACCTTGATAGTCTactaaataacacaaacattaatTTTGCAATATATGAGAaatgaatcaatacaattttaaaaatctacaataatgttttatggTTTGTGTTTGGGTCAGCTGTGTAATTAGTCATGGGTCTCTGCGACTTCATTTTCCAATTATGTCAACTGATTAGtccaaatgcaaaataatgggTGATGCTGGTTGGTTGAATCatgcaattcattttaattagcatATTTATACACCATTCATATGTTGTTGCAACACAGAtaatatggaaatgttttgttaCACCTTGGCACATTTTCACCAAGTGACCACGGCTTAAAACAAGCCCAGAATACACCAAGCGGCAAAGCTAAATTATAGTCCACTGTTCTGTTGGACAAGCCCAATTTCGGGGTCTATGGGTAGAATTGGCaacactgatacacagactAGAGCATTTCCACCCCCACTCAAGTCAGTGACAGTGTTTTGAGTTGAGGAATGACCTTCGTGCTCCAGAGAATATTCTCTGCCTCTTCTGCAGATCATTTTCAGCATGCTCATGAGGTGGTGCTGAAACTTCTTGTTTACAAATGCATACAGGATTGGGTTGAGGCAAGCGTGAACAAAAGCAAGGCTCTCCGTCACTTGAATGGCAAAGTCTAGGTGCTGGCTGGTGGTACAGTGTGAAATCACATGAAGGTCTTGCAAAGAGTGCAGGAACACCACCAGGTTGTAAGGGAACCACAacacgaaaaaaaaaaccaccaaAGCAATAGCTAACTTTAGACTTTTGGTTCCCCTGTGGAGCTTTGCTCTGGTTATGACACAAGAAATACGGGAGTAGAAAAACAGCATGGCCagaaatggaatgaaaaaacCAACAATATTCAGCTCGAACTTCATGAAGATTTTCCACCAGGACATGTGCTCCCCTCCGAAATTGTGCAAACACAGTTTATGATCTCTAAATTCTTGCAGCTCGGTGAAGATGACATCCGGAGCAGAGGCCAAGGCGGAGACAGTCCACACCGCTGCACAGATCGCACAACTCACTGGCAGTTTCCTGAGGTTAATGGTGTGGAAAGACCAGACGAACTCCAAATACCTGTCCAAGCTGATGCAGGTTATGAAGAAGATACTGCTGTACAAATTCATGGTGTAAATTAGGGTGACAGCTTTGCATGTAGTGCTTCCAAAAATCCACTCAGAATGTGCATAGACTGCCCAGAATGGCAGGGTTACCACAAACAAAAGGTCTGAGACGGCCAAGTTCAGCAAGTATATATCCACCATTCTTTTGAGCTTGATATATCTGATCAAAATGCCAGCCAGAAGCCCATTCCCGACCATTCCTAGCACGAACACAGAGGTGTACAGTACGGGCAGGAAAACTCTCGCGAATGCCTTCACGTGTCCCTTCTCACACACTCCATAATTGTGAAGGTGGTTTCCATTTTCCAAGTACTCGTTGTAGTAGCTGTAGTCATACATGTCATCATGTTCATCTTGAGAATCGTTGTTAAGGGCACTCAGGTCAGCCattatgttgtttttagttcagaatctgaaacaataaaaaaatgcatcacataatTATACAGaattgttattttagtttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39968 lncRNA downstream 320 6688860 ~ 6689516 (-) True G31932
TU39967 lncRNA downstream 2020 6687503 ~ 6687816 (-) True G31931
TU39965 lncRNA downstream 5785 6680625 ~ 6684051 (-) False AMCG00019165
TU39899 lncRNA downstream 424700 6264691 ~ 6265136 (-) True G31882
TU39895 lncRNA downstream 426998 6262637 ~ 6262838 (-) True G31878
TU40037 lncRNA upstream 532286 7224589 ~ 7224997 (-) True G31993
TU40042 lncRNA upstream 598548 7290851 ~ 7291130 (-) True G31997
TU40089 lncRNA upstream 723782 7416085 ~ 7419853 (-) True G32037
TU40109 lncRNA upstream 981452 7673755 ~ 7687169 (-) True G32057
TU40113 lncRNA upstream 1010539 7702842 ~ 7703076 (-) True G32061
AMCG00019165 mRNA downstream 5535 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019164 mRNA downstream 11508 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019166 mRNA downstream 56992 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019161 mRNA downstream 238225 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019157 mRNA downstream 498625 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019170 mRNA upstream 85101 6777404 ~ 6781144 (-) True AMCG00019170
AMCG00019174 mRNA upstream 177211 6869514 ~ 6897553 (-) True AMCG00019174
AMCG00019175 mRNA upstream 251746 6944049 ~ 6963885 (-) True AMCG00019175
AMCG00019176 mRNA upstream 315481 7007784 ~ 7014100 (-) True AMCG00019176
AMCG00019177 mRNA upstream 486323 7178626 ~ 7179255 (-) True AMCG00019177
TU39603 other downstream 1753840 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 4511186 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4606565 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4606565 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4979293 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6969813 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7799588 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7799588 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8259539 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9000179 15692482 ~ 15721452 (-) True G33381

Expression Profile