RNA id: TU39986


Basic Information

Item Value
RNA id TU39986
length 271
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G31947
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6819765 ~ 6820035 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaattcaatgtggacaagtgcaagctattacatgcaggtaacagaaatgtccactataattacactatgggaggaatagaactagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcactttctccatccaaacaatgtggagaagcaataaaaaaaggcaaacaggatgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcgctagttagagctcatctggat

Function

GO:

id name namespace
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0006376 mRNA splice site selection biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000245 spliceosomal complex assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39966 lncRNA upstream 127485 6691722 ~ 6692280 (+) True G31930
TU39948 lncRNA upstream 141377 6678165 ~ 6678388 (+) True G31915
TU39947 lncRNA upstream 146588 6672898 ~ 6673177 (+) True G31914
TU39915 lncRNA upstream 383058 6435691 ~ 6436707 (+) False G31894
TU39914 lncRNA upstream 383776 6434199 ~ 6435989 (+) True G31894
TU40036 lncRNA downstream 404597 7224632 ~ 7224997 (+) True G31992
TU40059 lncRNA downstream 611645 7431680 ~ 7431944 (+) True G32010
TU40100 lncRNA downstream 800469 7620504 ~ 7620812 (+) True G32048
TU40173 lncRNA downstream 1351610 8171645 ~ 8171861 (+) True G32113
TU40198 lncRNA downstream 1525420 8345455 ~ 8347293 (+) False G32130
AMCG00019168 mRNA upstream 49548 6769243 ~ 6770217 (+) True AMCG00019168
AMCG00019167 mRNA upstream 113873 6704357 ~ 6705892 (+) True AMCG00019167
AMCG00019169 mRNA upstream 128681 6689915 ~ 6691084 (+) True AMCG00019169
AMCG00019163 mRNA upstream 151620 6606972 ~ 6668145 (+) True AMCG00019163
AMCG00019162 mRNA upstream 253272 6485078 ~ 6566493 (+) True AMCG00019162
AMCG00019171 mRNA downstream 3200 6823235 ~ 6832585 (+) True AMCG00019171
AMCG00019172 mRNA downstream 77783 6897818 ~ 6907983 (+) True AMCG00019172
AMCG00019173 mRNA downstream 88098 6908133 ~ 6917381 (+) True AMCG00019173
AMCG00019178 mRNA downstream 539568 7359603 ~ 7379672 (+) True AMCG00019178
AMCG00019180 mRNA downstream 563404 7383439 ~ 7394256 (+) True AMCG00019180
TU39314 other upstream 3609082 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 3609082 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 3723339 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 4672202 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 600466 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 1525420 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 1525420 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 2441339 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 2509444 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile