RNA id: TU40037


Basic Information

Item Value
RNA id TU40037
length 409
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G31993
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7224589 ~ 7224997 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacggaaaacaggagacacttcttcacacagagaggcgtcacaatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39969 lncRNA downstream 532286 6689836 ~ 6692303 (-) True G31933
TU39968 lncRNA downstream 535073 6688860 ~ 6689516 (-) True G31932
TU39967 lncRNA downstream 536773 6687503 ~ 6687816 (-) True G31931
TU39965 lncRNA downstream 540538 6680625 ~ 6684051 (-) False AMCG00019165
TU39899 lncRNA downstream 959453 6264691 ~ 6265136 (-) True G31882
TU40042 lncRNA upstream 65854 7290851 ~ 7291130 (-) True G31997
TU40089 lncRNA upstream 191088 7416085 ~ 7419853 (-) True G32037
TU40109 lncRNA upstream 448758 7673755 ~ 7687169 (-) True G32057
TU40113 lncRNA upstream 477845 7702842 ~ 7703076 (-) True G32061
TU40129 lncRNA upstream 530256 7755253 ~ 7758227 (-) True G32076
AMCG00019177 mRNA downstream 45334 7178626 ~ 7179255 (-) True AMCG00019177
AMCG00019176 mRNA downstream 210489 7007784 ~ 7014100 (-) True AMCG00019176
AMCG00019175 mRNA downstream 260704 6944049 ~ 6963885 (-) True AMCG00019175
AMCG00019174 mRNA downstream 327036 6869514 ~ 6897553 (-) True AMCG00019174
AMCG00019170 mRNA downstream 443445 6777404 ~ 6781144 (-) True AMCG00019170
AMCG00019179 mRNA upstream 112850 7337847 ~ 7338238 (-) True AMCG00019179
AMCG00019183 mRNA upstream 195746 7420743 ~ 7422322 (-) True AMCG00019183
AMCG00019182 mRNA upstream 206677 7431674 ~ 7433638 (-) True AMCG00019182
AMCG00019185 mRNA upstream 220889 7445886 ~ 7470263 (-) True AMCG00019185
AMCG00019184 mRNA upstream 255096 7480093 ~ 7499543 (-) True AMCG00019184
TU39603 other downstream 2288593 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 5045939 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 5141318 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 5141318 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 5514046 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6437119 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7266894 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7266894 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 7726845 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 8467485 15692482 ~ 15721452 (-) True G33381

Expression Profile