RNA id: TU40042


Basic Information

Item Value
RNA id TU40042
length 258
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G31997
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7290851 ~ 7291130 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAGCCCCAGatcgagggagactgacagttattttgtgtttcttccgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaacgagctgagattaggagcactccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40037 lncRNA downstream 65854 7224589 ~ 7224997 (-) True G31993
TU39969 lncRNA downstream 598548 6689836 ~ 6692303 (-) True G31933
TU39968 lncRNA downstream 601335 6688860 ~ 6689516 (-) True G31932
TU39967 lncRNA downstream 603035 6687503 ~ 6687816 (-) True G31931
TU39965 lncRNA downstream 606800 6680625 ~ 6684051 (-) False AMCG00019165
TU40089 lncRNA upstream 124955 7416085 ~ 7419853 (-) True G32037
TU40109 lncRNA upstream 382625 7673755 ~ 7687169 (-) True G32057
TU40113 lncRNA upstream 411712 7702842 ~ 7703076 (-) True G32061
TU40129 lncRNA upstream 464123 7755253 ~ 7758227 (-) True G32076
TU40156 lncRNA upstream 680063 7971193 ~ 7972225 (-) True G32096
AMCG00019177 mRNA downstream 111596 7178626 ~ 7179255 (-) True AMCG00019177
AMCG00019176 mRNA downstream 276751 7007784 ~ 7014100 (-) True AMCG00019176
AMCG00019175 mRNA downstream 326966 6944049 ~ 6963885 (-) True AMCG00019175
AMCG00019174 mRNA downstream 393298 6869514 ~ 6897553 (-) True AMCG00019174
AMCG00019170 mRNA downstream 509707 6777404 ~ 6781144 (-) True AMCG00019170
AMCG00019179 mRNA upstream 46717 7337847 ~ 7338238 (-) True AMCG00019179
AMCG00019183 mRNA upstream 129613 7420743 ~ 7422322 (-) True AMCG00019183
AMCG00019182 mRNA upstream 140544 7431674 ~ 7433638 (-) True AMCG00019182
AMCG00019185 mRNA upstream 154756 7445886 ~ 7470263 (-) True AMCG00019185
AMCG00019184 mRNA upstream 188963 7480093 ~ 7499543 (-) True AMCG00019184
TU39603 other downstream 2354855 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 5112201 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 5207580 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 5207580 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 5580308 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6370986 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7200761 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7200761 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 7660712 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 8401352 15692482 ~ 15721452 (-) True G33381

Expression Profile