RNA id: TU40059


Basic Information

Item Value
RNA id TU40059
length 265
lncRNA type inter_gene
GC content 0.67
exon number 1
gene id G32010
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7431680 ~ 7431944 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGCTGTCCGTGCCCGGCTTGCTGTAGCCCTCCACCGCGCCCTCCCACACGCTGTTGGCCATGGCGTTGCCGATGGCCGTCATCACCATGCTGAGCTCCACAGGCCAGTCGTCCAGGTCCAGCGAGCGCACGCGGGACAGGTGGGTGCCCAGGTTCCTGTGGATGCCCGAGCACTCGATGCAGATCAGTGCCCCCAGGTTCAGGCTGGCCCAGTCGGGGTCTGTGTGGGAGGCAGCGGGACACGGGTCAACATCAACATGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40036 lncRNA upstream 206683 7224632 ~ 7224997 (+) True G31992
TU39986 lncRNA upstream 611645 6819765 ~ 6820035 (+) True G31947
TU39966 lncRNA upstream 739400 6691722 ~ 6692280 (+) True G31930
TU39948 lncRNA upstream 753292 6678165 ~ 6678388 (+) True G31915
TU39947 lncRNA upstream 758503 6672898 ~ 6673177 (+) True G31914
TU40100 lncRNA downstream 188560 7620504 ~ 7620812 (+) True G32048
TU40173 lncRNA downstream 739701 8171645 ~ 8171861 (+) True G32113
TU40198 lncRNA downstream 913511 8345455 ~ 8347293 (+) False G32130
TU40344 lncRNA downstream 1463295 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 1731699 9163643 ~ 9222509 (+) True G32268
AMCG00019181 mRNA upstream 28536 7400255 ~ 7403144 (+) True AMCG00019181
AMCG00019180 mRNA upstream 37424 7383439 ~ 7394256 (+) True AMCG00019180
AMCG00019178 mRNA upstream 52008 7359603 ~ 7379672 (+) True AMCG00019178
AMCG00019173 mRNA upstream 514299 6908133 ~ 6917381 (+) True AMCG00019173
AMCG00019172 mRNA upstream 523697 6897818 ~ 6907983 (+) True AMCG00019172
AMCG00019187 mRNA downstream 264909 7696853 ~ 7701770 (+) True AMCG00019187
AMCG00019190 mRNA downstream 279711 7711655 ~ 7712858 (+) True AMCG00019190
AMCG00019189 mRNA downstream 289896 7721840 ~ 7723326 (+) True AMCG00019189
AMCG00019188 mRNA downstream 306580 7738524 ~ 7760540 (+) True AMCG00019188
AMCG00019191 mRNA downstream 517554 7949498 ~ 7964176 (+) True AMCG00019191
TU40051 other upstream 10597 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 4220997 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 4220997 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 4335254 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 5284117 2141830 ~ 2147563 (+) False G31110
TU40197 other downstream 913511 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 913511 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 1829430 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 1897535 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 1937954 9369898 ~ 9628662 (+) True G32293

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000149_00044116_00053354.mRNA True 1938 mRNA 0.51 14 CI01000149 44116 ~ 53678 (+)