RNA id: TU40089


Basic Information

Item Value
RNA id TU40089
length 3716
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G32037
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7416085 ~ 7419853 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGGATgagtgggggagggagggagctaGAGTTTCAtttgttacatatttattttgatccttttgtttgtgttcgttcttttctggatgtttttgtgtCTAGTTAAAAGCCTGTGTagttaaaacacttaaaaccaAAACACTACAGAGTTTACCCATGTTGTTTGTTTCGTCCTGTCAACAGCACTGCGGCTCAGAGTCCGGTCCCTAGTTCTGTGCATGAATGTGACCCCCTGCAGACCCTCACTAGTGCCTACAGCTCGGTGCACCCCGATGGTCTCCCGTCGGTCCTGAACGGATCGTGTGGAAACTGCACGAACCTCCGCCGCACTCTTCCTCCACCACTTCCACGTTTTGCATCCTTCCACCTGTCTTCCTCCCGCACTTTTGAAACCAAAGTAATTTCAGACATGAACTATGTAGCTCATATGCAAAGAGAAGAGTGAGAGTTTAAGGCGCCTCTTTCCTGTCCTAAAGAGTTTGATCAGATGAGGAAGTGGCTGGTGAAGTCAGATAGCCTTTGcactttagtttgttttttcgtttttgatttgtttttttctccactgtGCAAATTGGCTGTATTGAAGAGATGCAACTAATTAAGAAAAGCCTGGAGGGGGGAGAGGCTTCACTGCCTGCAGTCCATCGAATGTGAAGCAAACCATTGTTTTGCCGTCAGTGCTGATACTTGATCCGATTTAAAATTGTAGGAATGTCTTTTTCCTCCAATAGAGCTTTGTTAAAACATTAAGTCTGATGCACTTAATTCACTTCACTTCAGTATTTTCACAATATTAATGATTTGCCAATATCAACTCTCAAATACTTCAAGTCACTATTCTCTTCTGTTGAACACCTTACACCTAAAAAACATTCGTACAATTTCCTGCTCGGGCCAAAGTTTACATCCTACACTTGTGTTACCCTCTCCGATGAACAGTATTCTTccaaagattttattttaaagattaggTTTGTTATCTTcgtctttgttttttatctaTACATCTTGAAGTCACATTATGGGCCACTACCAGCTGACCATGTCCAGACTGTTCTGATATGGAAGATTTCAAGACTTTAGTTTTCATgaatcactttttaattttatgtttctgCACAGAACTACGGAGTCTTCAACTTGacaaaaaggggaaaatgtaattgaaaatatcGTGTGAAAGACATACCTGTTGGTTAGTCTTGTTCTGCATGTTGCCATCCGTTAACAGCGTATCATTCAGCTGACGCATCGGTGTTTGCCTGGGCCGTGTCCTTGCAGGAACTGATCAGTCACATTAATGTGTCCCGCGGGGGCTGTAATATCGCCATTGATCAGTTTCACCTGCGTTTGGATGTTATACAGTTGCTTCATTGAATAGAGACCGAGAGCgcttctgtttttagtttttagttcaGTTCCTGAGAGCTGTTATCAATAGAGGTGACTGTGTGCCAGGTAGCGGCCGTGGTCATTAGCAAAGAGTCTCgcttttatatgtataattacCATTCAGGTACATTGAGAGTCAAGATGGATACACTTGACTACAAAGCCAACATTTAGTCCAGCGTGACACCCACGGcttatttcaataaactgaatGACAGTGATAACCGCCCCGGGGTCCCGGAGTGTGTCCTCTTCGCTTCGATTGGGGGTTGTGAAATACATCTGTCATCCCATATGTACTAGTTTTGATGACACCCCTGCGCTGTCCTAGTTCACGCTGGCCTCTGCCCCCTGACATGATCTGTGTTACAGAATGTctcgttttgttttgtcaacTTTGCAAATGCAAACACTTTCCCACATCAATTGCTTTATGATGGTTTTCCTCAGATTTGTCTTCAGAAACTATGTGAGCAAAGCTGTGCATGTGGGGTAGACGTACCTTCAGTTgagtattttacaattatttggGTAACATATGAGTAGCACATCATGCAGTATTATGGCAAATGATCAGTAATCAGCTGCTATAGTTACCCTCTTCTCTCAATGGTAAAATCATGGTTACAATCTCCTGTTCTTTAATATAAGGGAATGTGCCTGCGGCCTACAATAGTTTCAGGGATATATAGAgtgcataaatatatttaaatatatttgttttagtggaaaaaaaaaagataattgtttGTCATTTACAGTTGGTATAGATTTAGTCTGACTTTGCAGCACACTCTGAAACTAAGAGAACGCCATCTTTAAAACCAATTCAAATtcacgtgtgtgtttgtgtgtgtgtgtagcacagCGTTGAAACACAACCCTGGTGTCACCCGGGCCTACATTAGTGCACAAGCAGTGCTTTCCTTAATTGTCGTAAACTCTGtggtactgtgtgtgtgtgcgtatgttggaatgagagagagagattgacagGATTTGTGAGTAAATggctaatgaataaataaatgcaaatgtgtgtcAAACGGGTTAGAAACCAAGTATTGTAGTGTCGGTAGCTTCTTCCTGTGCAGACACCCGGGCGTTGCCGGCGCTGCGCCCCAGACTTGCTTTGAAATCCCCTCTTCCAGTCGACGTAGCTGCAGAAAGCACAAATACCTTTTCGTCGTTGTTCGTTTTCCCTCCTGAAATGACATGAAAGCCAGTGTCATGTGCGCACATCTCAGGGCCCTTTGTAAGCAagggttaaaaagaaaaaaaagacttgcaGTTGGATGTCCTGCAAGAAAACGTGCACAGGACCTCAACCAATACAATAAATGCTTCAAGTGTGCTGGTGATGGAGAACAATACTCTCCAGAGGCGCACGAGCTTTAGGAAATTGTGAATAGACTCCCCACACCCCATACACACACGTGGTGTCGTATAGTTTGCATtcattacagttacagttacattGTCCCTACGAAGCAACCTGCTCTTCCCAGTCTGTCTAGATGGCCGATTTATCCAGTCAGTTGTTCAAGTGAGCTCATAAGGGAGTTTCAAAGCAAGTCTATTGAAGGGGTGAGTTTCAGATGGGAAACGAACCCAATCTTAGAACGGCAAGCTGAGCAAACCCCCCATCGAAGTTGCCTGTGACTCCTTAACCTCCCATCATGAGCGCAAGTCTTTCCTCCAGTGCCGTCGGTAGAAATCCATCTCCCTGACCCGCAATGCATTAATATACTGCTTAGAAACCGTGTGGAGGGATCGTGAGGAATGATAAGACTTATTCTGTATCTTCCCCTCCTTCTTTGAGCACAGTATTGTAtctctgtattttaaaagataaataaatcgAACACTATGTAATCTTGGGTTGTTGTCACACGCTGTCCTATCAAAAGGACGCAGCCAACCAAAATACTTTCAGGTGATCGCTCACCTCATGCTTTCCAATACCGCAGCCTCGCTCGCTCCCCATGGGTTTCGCTCCCTCGTCTTCGGTTCCTGTTCTTTTCCTTTCcgttgtcgttttgtttttcagtatttgaGGTACTCTGGTTATATTTCGTTGCTTCTACATTGCCAGACCCTGCGCGGTACTTCatgtataataatgtacatttgaaatatttatattgcagtatgtaaatatatttttttgttcctttcttttctctgcattaaaaacagaaacaaagctaaagcaaaaaaaaaaaaaagtaacctGCTGTGTGTTTGGATGACTGTtgactgataataataaatgctcCAATAAAATGTAGCTGTACCCAAATTGTGGGGAAAAGTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40042 lncRNA downstream 124955 7290851 ~ 7291130 (-) True G31997
TU40037 lncRNA downstream 191088 7224589 ~ 7224997 (-) True G31993
TU39969 lncRNA downstream 723782 6689836 ~ 6692303 (-) True G31933
TU39968 lncRNA downstream 726569 6688860 ~ 6689516 (-) True G31932
TU39967 lncRNA downstream 728269 6687503 ~ 6687816 (-) True G31931
TU40109 lncRNA upstream 253902 7673755 ~ 7687169 (-) True G32057
TU40113 lncRNA upstream 282989 7702842 ~ 7703076 (-) True G32061
TU40129 lncRNA upstream 335400 7755253 ~ 7758227 (-) True G32076
TU40156 lncRNA upstream 551340 7971193 ~ 7972225 (-) True G32096
TU40245 lncRNA upstream 918183 8338036 ~ 8375404 (-) True G32144
AMCG00019179 mRNA downstream 77847 7337847 ~ 7338238 (-) True AMCG00019179
AMCG00019177 mRNA downstream 236830 7178626 ~ 7179255 (-) True AMCG00019177
AMCG00019176 mRNA downstream 401985 7007784 ~ 7014100 (-) True AMCG00019176
AMCG00019175 mRNA downstream 452200 6944049 ~ 6963885 (-) True AMCG00019175
AMCG00019174 mRNA downstream 518532 6869514 ~ 6897553 (-) True AMCG00019174
AMCG00019183 mRNA upstream 890 7420743 ~ 7422322 (-) True AMCG00019183
AMCG00019182 mRNA upstream 11821 7431674 ~ 7433638 (-) True AMCG00019182
AMCG00019185 mRNA upstream 26033 7445886 ~ 7470263 (-) True AMCG00019185
AMCG00019184 mRNA upstream 60240 7480093 ~ 7499543 (-) True AMCG00019184
AMCG00019186 mRNA upstream 180016 7599869 ~ 7607375 (-) True AMCG00019186
TU39603 other downstream 2480089 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 5237435 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 5332814 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 5332814 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 5705542 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6242263 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7072038 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7072038 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 7531989 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 8272629 15692482 ~ 15721452 (-) True G33381

Expression Profile