RNA id: TU40109


Basic Information

Item Value
RNA id TU40109
length 619
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G32057
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7673755 ~ 7687169 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCATCCGAGAGAGTTGCGTTTATCCGGCGTCAATACGGGGGTAATTCCACAGTTTAAACCCGTGCTCTGCCTTGTGGTGTTTGCAAAGTGGGAAGTAACGTGTGGGAGCAAACTTGGGAGCCACAGACTCGGTGCCGAGCGGCTCCAGAGGCCCGTCCTGTTTCCACTGCAGCTCCCGAGCGGCGTTTGAACAGCCGCCGCCGACAGCGACAACAGGAATAACATCCACCCGGCTGGCGAGCACAACCCGACCGCGGACACAGCCGGGATCCGTGTGTCCAGCGAATCGGACTCCCATAGGGGGGTGTCCGCACAACACGGAGCGACGCCGGACGGCTGCGGAGTAAATTTCTCTCACCACAGACAGCGGCTTTCCATTTCACCGAACACAATCACTGGAACAGGGCACTTCTCAAGATGAAAGGAAAAGCAACTGACAAGGGCACGGTGATCCTTCAAAAGGTTACCGGAAAGCTGTGAATGAACTGCTGTGTCCACGATCGGTGGGAACAGGACGCCAACATCGCTCTGTCATACAAGCAAAggaacattttgttaaaattacattcagttttcccctgaaaaacaaataaatacatcaataaaaagtgtttcag

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40089 lncRNA downstream 253902 7416085 ~ 7419853 (-) True G32037
TU40042 lncRNA downstream 382625 7290851 ~ 7291130 (-) True G31997
TU40037 lncRNA downstream 448758 7224589 ~ 7224997 (-) True G31993
TU39969 lncRNA downstream 981452 6689836 ~ 6692303 (-) True G31933
TU39968 lncRNA downstream 984239 6688860 ~ 6689516 (-) True G31932
TU40113 lncRNA upstream 15673 7702842 ~ 7703076 (-) True G32061
TU40129 lncRNA upstream 68084 7755253 ~ 7758227 (-) True G32076
TU40156 lncRNA upstream 284024 7971193 ~ 7972225 (-) True G32096
TU40245 lncRNA upstream 650867 8338036 ~ 8375404 (-) True G32144
TU40246 lncRNA upstream 651120 8338289 ~ 8339693 (-) False G32144
AMCG00019186 mRNA downstream 66380 7599869 ~ 7607375 (-) True AMCG00019186
AMCG00019184 mRNA downstream 174212 7480093 ~ 7499543 (-) True AMCG00019184
AMCG00019185 mRNA downstream 203492 7445886 ~ 7470263 (-) True AMCG00019185
AMCG00019182 mRNA downstream 240117 7431674 ~ 7433638 (-) True AMCG00019182
AMCG00019183 mRNA downstream 251433 7420743 ~ 7422322 (-) True AMCG00019183
AMCG00019204 mRNA upstream 939845 8627014 ~ 8636548 (-) True AMCG00019204
AMCG00019203 mRNA upstream 949381 8636550 ~ 8662947 (-) True AMCG00019203
AMCG00019209 mRNA upstream 1159982 8847151 ~ 8901878 (-) True AMCG00019209
AMCG00019207 mRNA upstream 1281717 8968886 ~ 8984696 (-) True AMCG00019207
AMCG00019208 mRNA upstream 1346622 9033791 ~ 9044972 (-) True AMCG00019208
TU39603 other downstream 2737759 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 5495105 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 5590484 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 5590484 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 5963212 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 5974947 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 6804722 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 6804722 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 7264673 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 8005313 15692482 ~ 15721452 (-) True G33381

Expression Profile