RNA id: TU40197


Basic Information

Item Value
RNA id TU40197
length 1473
RNA type TUCP
GC content 0.39
exon number 4
gene id G32130
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8345455 ~ 8384592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGATCTGCCCAACGTGCCCCGGAGTGTGTACCGAGCACAAggagtgtgtgcagtgcagggcATTTCAAACTGGAGAGAAGAAGGACACCTGCGAGAGAGACTGCTCCTATTTCAACCTCATCAAGGTGAAGGACCGTGATAAGTTGCCCCAGCCAAACCAGGCCTTTCCCCTCATGCACTGCAAGGAGAGAGACGCCAATGACTGCTGGTTCTATTACACCTACGCCATCAACAACACCGAAAAAGAAGTCCACGTGGTGGAGACTCAAGAGTGCCCTGCAGGGCCGGATATCATCCCAATTGTTGCCGGAGTGGTGGCAGGCATTGTGCTCATAGGCCTGGCCCTGCTGCTCATCTGGAAATTGCTGATGATCATCCACGACCGGAGAGAGTTTGCCAAGTTCGAGAAGGAGAAGATGAATGCCAAGTGGGACACGggtgAAAATCCCATCTATAAGAGTGCTGTGACAACTGTGGTCAATCCTAAATATGAGGGCAAATGATGGGGCCCCTCTTCTCTCTACACAACACTGTATGCAAAGTAGTTTTGgggggtgtttttattttattttttgttttgtttttgtagtcaCGGTATTTTAGCATTAAGTTAGGCCACTATTTCAGTAATTATTACTAacaatagtttttattttgtatgcattttttggaaaatgtacagtatgtataaacttggtttattgcttttttttgttttgttcatttttatgtttttattgtaatgttttattttttaaacatttcgcCACACGACATGCAAGATCGGCAAGGGTCAGATTATGCATTTCATAGAAACAACCCATTATGACAGAAGAGATCTGTGTACAATTTTTTTGTATCCATTGTATGGGTGGCAGGGCCTGAATTTATAACAAACTTGGTTTTGTGAGTTAGTTGGTTTTTGTGCATGTGATGGATAGATTTGGAACtcaataagtaaatacatggaggtttaattttttttcctccatcaaGGGATAGGTAATTGGATTGGTGAATGAAGTCTCAAGTGAAATAAGTGAAAGTATTTTTCTGGAAGTGGGGGCTGATTGCTTAATAAATTCAGGCCCGTTTCGAAACCCGTTTCCAGCAATGCCAAAAATAACTGCCTTATTTACGGAAATAAGccttattttaagtgttttaccATAAATTCCTCAGCCTTAGCTTGCTTCTTTTTATAATTatctttatactttttttttttattgaggtTTATTCCATTTGAAAGATCAATACAAAAGGATTCTGTACAAAGATCAGTGTTAAGGGAATGAACTTTTTGAAAAACTTCATTTAAAGGAAAGAGAACAGCCTTAAAGCGCCTCCTGTATGACACATCACACTCTTGTTTTAAAGTGCCTTTTTATTTCAGCGTTATGTTCACTTTTGCAATACTGtttctgaaattatttattaaataaagtacCAAAAATTACCTGGagtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40173 lncRNA upstream 173594 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 724643 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 913511 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 1120458 7224632 ~ 7224997 (+) True G31992
TU39986 lncRNA upstream 1525420 6819765 ~ 6820035 (+) True G31947
TU40344 lncRNA downstream 510647 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 779051 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 876782 9261374 ~ 9471843 (+) False G32286
TU40431 lncRNA downstream 924045 9308637 ~ 9324063 (+) True G32287
TU40434 lncRNA downstream 965257 9349849 ~ 9352655 (+) True G32290
AMCG00019197 mRNA upstream 22627 8308993 ~ 8322828 (+) True AMCG00019197
AMCG00019194 mRNA upstream 46689 8289074 ~ 8298766 (+) True AMCG00019194
AMCG00019193 mRNA upstream 316728 8014532 ~ 8028727 (+) True AMCG00019193
AMCG00019192 mRNA upstream 361787 7983197 ~ 7983668 (+) True AMCG00019192
AMCG00019191 mRNA upstream 381279 7949498 ~ 7964176 (+) True AMCG00019191
AMCG00019196 mRNA downstream 38554 8423146 ~ 8423334 (+) True AMCG00019196
AMCG00019195 mRNA downstream 63288 8447880 ~ 8461935 (+) True AMCG00019195
AMCG00019201 mRNA downstream 113283 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019200 mRNA downstream 156021 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019202 mRNA downstream 193333 8577925 ~ 8606120 (+) True AMCG00019202
TU40051 other upstream 924372 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 5134772 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 5134772 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 5249029 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 6197892 2141830 ~ 2147563 (+) False G31110
TU40426 other downstream 876782 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 944887 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 985306 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 2020047 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 6054661 14439253 ~ 14486706 (+) True G33159

Expression Profile