RNA id: TU40428



Basic Information


Item Value
RNA id TU40428
length 659
lncRNA type read_through
GC content 0.50
exon number 3
gene id G32286
representative False

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9261374 ~ 9539211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGGGATTAAGGCTCCCACTTCCGCCAGGCTGTTCCATTGATTGAGGGACGGACGGGCGTCTGGCTGGGAAGGATCACGCTCGGAAAACAAGGATGCGGTCGAGTTAGGGTAGAGATTCGGGAAGAGGAAGATCTGAAATCATTTGTACgaagaaaaggaaatacacaaaaccaaacagaCCTGCCAGCACTTTGGATATAGAAGCCACGACTCGCCAGAACCTGCAGAAAGAGAAGCAAAGCGACCGACTTTGACCGGACTCGTGTATTATTTGcgctacaaaaataaacacggAACATCGTGTATCCCGAGAGCATGAGGGCCTTGTCTGGGAGCTGATCGTGATGTTTGGAAGACTTGTTGAAAGAGGGAGAGTTACAGGTTTGAACAGGGAGCGTCTGCCAATGGCATAAATCTTCCTGAAGACAACTTGGCCGAGTGTGGTTGAACCGAATCTGATCCCTGCGTTCTGGCTATAGAGTGTTACTCTGACATTCCTGTGTGATATTCCACAGGCAGGAACCATGCCGGCGCTATCAACAGGACCTGGAAATGACACAGGTACAGTGAACTCTCGAGCCCCATGGCTTTGGTGTTGTTGGTACGAATGGAAGCTTTCAAGGAACGCTGTTGTATTTACACTGAACCCGAGTGAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40402 lncRNA upstream 38865 9163643 ~ 9222509 (+) True G32268
TU40344 lncRNA upstream 327628 8895239 ~ 8933746 (+) True G32235
TU40198 lncRNA upstream 914081 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 1089513 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 1640562 7620504 ~ 7620812 (+) True G32048
TU40474 lncRNA downstream 221426 9693269 ~ 9750270 (+) True G32321
TU40479 lncRNA downstream 246179 9718022 ~ 9718564 (+) True G32324
TU40482 lncRNA downstream 247196 9719039 ~ 9726753 (+) True G32325
TU40475 lncRNA downstream 270404 9742247 ~ 9750270 (+) False G32321
TU40581 lncRNA downstream 338041 9809884 ~ 9812637 (+) True G32418
AMCG00019206 mRNA upstream 205518 9046918 ~ 9055856 (+) True AMCG00019206
AMCG00019205 mRNA upstream 476435 8781781 ~ 8784939 (+) True AMCG00019205
AMCG00019202 mRNA upstream 655254 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019200 mRNA upstream 720069 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019201 mRNA upstream 739520 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019217 mRNA downstream 154567 9626410 ~ 9628658 (+) True AMCG00019217
AMCG00019218 mRNA downstream 182483 9654326 ~ 9663886 (+) True AMCG00019218
AMCG00019219 mRNA downstream 205817 9677660 ~ 9714621 (+) True AMCG00019219
AMCG00019227 mRNA downstream 260347 9732190 ~ 9745637 (+) True AMCG00019227
AMCG00019222 mRNA downstream 316518 9788361 ~ 9792594 (+) True AMCG00019222
TU40197 other upstream 876782 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 876782 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1840291 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 6050691 3203787 ~ 3210683 (+) False AMCG00019100
TU40734 other downstream 932796 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4967410 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5692505 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 6572099 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 11135631 20607474 ~ 20610889 (+) False G34170

Expression Profile