RNA id: TU40438



Basic Information


Item Value
RNA id TU40438
length 1077
RNA type TUCP
GC content 0.48
exon number 7
gene id G32293
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9369898 ~ 9628662 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGCAGCCAGAAGCAACCGACGCGGCAAACTGTCGCACACTCTCAACGAATCGTCAACAGgtGCATGGAAGAGGACGTGTGGCTACCGAGTTCAGTGAGAGCTCCACAGATGAGGAtgacaatgaaaacaacaataggCCGAAGCTCCTACAGCAGAGCACCTCAGACCTGCCTGCTGAGTGCGCTCAGATTGAAAAGCTGGCCAACATCCTCaagGGAGGCAACCAGACAGCAACTGTGATTGCTTTGTGCTCAATGAGGGACTTTAATTTAGCACAGGAGACATGCCAATTGGCCATCAGGGATGTAGGTGGCCTTGAAGTTCTCATTAACTTGCTGGATACAGAAGAGATTAAATGCAATATTGGTTCCCTGAAAATCTTAAAGGAAATCAGCCGAAACGCACAGATCCGGAGAGCCATTGCTGACCTTGGTGGTTTACAAACCATGGTGAAAATATTAGATTCCCCAGATAAGGACCTCAAATGTCTAGCTGCAGAGACAATCGCTAATGTGGCCAAGTTTAGAAGGGCAAGAAGGACAGTACGACAGCATGGAGGAATAAAGAGACTTGTGGAACTGCTGGACTGTGTCCCCGAAGACTCTGCCACCCTGACTCCTGAGCAGGAGAAAGACATCGAGGTGGCGCGGTGTGGTGCCCTGGCATTGTGGAGCTGCAGTAAGAGCCCCAGGAACAAAGAAGCCATTCGCAAAGCGGGGGGCATTCCACTGCTAGCTCGGCTCCTGAAATCACCTCATGAAAACATGCTGATCCCAGTAGTCGGTACACTGCAGGAATGTGCTTCTGAgCAAAGATACAGGGTTGCGATTCAGACTGAAAAAATGATTGAAGACCTGGTGAAAAATCTTAATTGTGATAACCAGGAACTTCAAATGCATTGTGCCAGTGCTATCTTTAAGTGCGCAGAAGACAAGAAAACACGTGACCTTGTCAGACAGTATGAGGGGCTTCAGCCTTTGGTTTCTCTTCTGAACATGTCTGAGAACAAGCAACTCTTAGCTGCTACAACTGGAGCTATCTGGAAATGTTCCATCAGCATGGAGAATGTTGTGAAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40434 lncRNA upstream 17243 9349849 ~ 9352655 (+) True G32290
TU40431 lncRNA upstream 45835 9308637 ~ 9324063 (+) True G32287
TU40402 lncRNA upstream 147389 9163643 ~ 9222509 (+) True G32268
TU40344 lncRNA upstream 436152 8895239 ~ 8933746 (+) True G32235
TU40198 lncRNA upstream 1022605 8345455 ~ 8347293 (+) False G32130
TU40474 lncRNA downstream 64607 9693269 ~ 9750270 (+) True G32321
TU40479 lncRNA downstream 89360 9718022 ~ 9718564 (+) True G32324
TU40482 lncRNA downstream 90377 9719039 ~ 9726753 (+) True G32325
TU40475 lncRNA downstream 113585 9742247 ~ 9750270 (+) False G32321
TU40581 lncRNA downstream 181222 9809884 ~ 9812637 (+) True G32418
AMCG00019215 mRNA upstream 21257 9336645 ~ 9348641 (+) False AMCG00019215
AMCG00019206 mRNA upstream 314042 9046918 ~ 9055856 (+) True AMCG00019206
AMCG00019205 mRNA upstream 584959 8781781 ~ 8784939 (+) True AMCG00019205
AMCG00019202 mRNA upstream 763778 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019200 mRNA upstream 828593 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019218 mRNA downstream 25664 9654326 ~ 9663886 (+) True AMCG00019218
AMCG00019219 mRNA downstream 48998 9677660 ~ 9714621 (+) True AMCG00019219
AMCG00019227 mRNA downstream 103528 9732190 ~ 9745637 (+) True AMCG00019227
AMCG00019222 mRNA downstream 159699 9788361 ~ 9792594 (+) True AMCG00019222
AMCG00019221 mRNA downstream 184728 9813390 ~ 9824416 (+) True AMCG00019221
TU40432 other upstream 21079 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 985306 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 985306 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1948815 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 6159215 3203787 ~ 3210683 (+) False AMCG00019100
TU40734 other downstream 775977 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4810591 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5535686 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 6415280 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 10978812 20607474 ~ 20610889 (+) False G34170

Expression Profile