RNA id: TU40474



Basic Information


Item Value
RNA id TU40474
length 406
lncRNA type read_through
GC content 0.43
exon number 2
gene id G32321
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9693269 ~ 9750270 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


taggcaggtggtcataatgttatggctgatcggtgtatatatatatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgttggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40428 lncRNA upstream 221426 9261374 ~ 9471843 (+) False G32286
TU40434 lncRNA upstream 340614 9349849 ~ 9352655 (+) True G32290
TU40431 lncRNA upstream 369206 9308637 ~ 9324063 (+) True G32287
TU40402 lncRNA upstream 470760 9163643 ~ 9222509 (+) True G32268
TU40344 lncRNA upstream 759523 8895239 ~ 8933746 (+) True G32235
TU40581 lncRNA downstream 59614 9809884 ~ 9812637 (+) True G32418
TU40608 lncRNA downstream 167050 9917320 ~ 9920036 (+) True G32437
TU40671 lncRNA downstream 358636 10108906 ~ 10109150 (+) True G32490
TU40745 lncRNA downstream 712893 10463163 ~ 10508063 (+) True G32549
TU40925 lncRNA downstream 1627686 11377956 ~ 11448251 (+) True G32671
AMCG00019218 mRNA upstream 29383 9654326 ~ 9663886 (+) True AMCG00019218
AMCG00019217 mRNA upstream 64611 9626410 ~ 9628658 (+) True AMCG00019217
AMCG00019212 mRNA upstream 279083 9407301 ~ 9414186 (+) True AMCG00019212
AMCG00019214 mRNA upstream 316524 9357098 ~ 9376745 (+) True AMCG00019214
AMCG00019215 mRNA upstream 344628 9336645 ~ 9348641 (+) False AMCG00019215
AMCG00019222 mRNA downstream 38091 9788361 ~ 9792594 (+) True AMCG00019222
AMCG00019221 mRNA downstream 63120 9813390 ~ 9824416 (+) True AMCG00019221
AMCG00019237 mRNA downstream 123315 9873585 ~ 9884570 (+) True AMCG00019237
AMCG00019236 mRNA downstream 143591 9893861 ~ 9905733 (+) True AMCG00019236
AMCG00019234 mRNA downstream 189556 9939826 ~ 9947046 (+) True AMCG00019234
TU40438 other upstream 64607 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 154058 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 344450 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 1308677 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 1308677 8345455 ~ 8384592 (+) True G32130
TU40734 other downstream 654369 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4688983 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5414078 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 6293672 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 10857204 20607474 ~ 20610889 (+) False G34170

Expression Profile