RNA id: TU40671



Basic Information


Item Value
RNA id TU40671
length 245
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G32490
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 10108906 ~ 10109150 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgattttgaagacttgaatcaagtccccatgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgcacacagtatccagatgagctctaactagtgcattgtacagtctgaacattactgcccttgttctca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40608 lncRNA upstream 188870 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 296269 9809884 ~ 9812637 (+) True G32418
TU40474 lncRNA upstream 358636 9693269 ~ 9750270 (+) True G32321
TU40745 lncRNA downstream 354013 10463163 ~ 10508063 (+) True G32549
TU40925 lncRNA downstream 1268806 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 1523208 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 1523208 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 1891813 12000963 ~ 12001164 (+) True G32778
AMCG00019234 mRNA upstream 161860 9939826 ~ 9947046 (+) True AMCG00019234
AMCG00019236 mRNA upstream 203173 9893861 ~ 9905733 (+) True AMCG00019236
AMCG00019237 mRNA upstream 224336 9873585 ~ 9884570 (+) True AMCG00019237
AMCG00019221 mRNA upstream 284490 9813390 ~ 9824416 (+) True AMCG00019221
AMCG00019222 mRNA upstream 316312 9788361 ~ 9792594 (+) True AMCG00019222
AMCG00019235 mRNA downstream 161469 10270619 ~ 10279108 (+) True AMCG00019235
AMCG00019238 mRNA downstream 173839 10282989 ~ 10304824 (+) True AMCG00019238
AMCG00019242 mRNA downstream 221965 10331115 ~ 10403491 (+) True AMCG00019242
AMCG00019245 mRNA downstream 539429 10648579 ~ 10658798 (+) True AMCG00019245
AMCG00019248 mRNA downstream 592126 10701276 ~ 10709432 (+) True AMCG00019248
TU40438 other upstream 480244 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 569695 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 760087 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 1724314 8345455 ~ 8384592 (+) False G32130
TU40734 other downstream 295489 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4330103 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5055198 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 5934792 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 10498324 20607474 ~ 20610889 (+) False G34170

Expression Profile