RNA id: TU40925


Basic Information

Item Value
RNA id TU40925
length 3069
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G32671
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11377956 ~ 11448251 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACGccgctctcctggcagtcagtAAGTCAGTGCGGGAGTGGAGCAGCTAGAGAGGCACAAGTAAGTAGTTAAGAGGGAAAGGCAGGGACTGGACGCTTTAGGTACCCGGAGAGTAACTGTAAAAAAGAGGAACAGTTTCAGTTCTGAGCAAGAGGAAGAGTTACATCCATCTTACCCCGGGAGCTGGGGGGGAACATCTGTTACACTCCCGCAATGGAGAGAGTTATAACTTGCTTCTTTGCGGCGGTCAGTCTTTTGGGCTTAGTTAGAGGACAAGCATTTAAAGGTGACTGTAACTTTGAGAACTCGTATGTTACCTGTGGATATAGCCAAGCTAAAGATGACGACCTTGATTGGGAGCAAGTCAACACCAAGGAGAAGCCTTCCTCGGATCCATGGATACCATCAGcaTTGACCCTCCGGTTTCTAAGGAAGCAGATGGTACTTCCTTAGCCCACTGGCAGATGGATGCTTACAATCAGCGGAAGCCATTAactatgaaacaaaacaagagacGGGCTGATAATACACCTGGACTAAAACAATTGTGTTGCCATAAAATGAAAGTCTGGCTAACATGACAATGTTAAGTTATGACAATTATGCTTTTGTGTTCTCCGTGATAAGCTATTTGTATACAAAACTGGAAAGTAACCGCAATACCATATTCTTTGAgaactgcatttaatttgcacAGTGGTTTTGGCTATGgcttcattttctgtttcccATCTCTTCTCAGTGGAATGAGTGCAACATAAAGGGAATGTCAATTATTTTGGATTAAGATGTGAAATTTCAaaactttattataaaaatattagtttCATATTCTTACCTCAAGCTATGGAGTGCATTGGGGGTGTTTGCATATTGGACATCTTATATACTGATCTCTACGTAGTCACCTACAAAATATCCACcctaaaacaatacattaaatacaataatagatttatatttattgctaTTACCTGGGGGAATTTTTCCTTTATGAAGCATAATTGACttataaatcaaatgtttattgCTTTAATCATTCATTTGGATTACTTCTGGAAAGTACAGTACTGTTGTTGCATCACTTCCACCCACACCCAGTAGAGTCGCACTACTGGAGGAAATGATCAGAGGGTGGATTCAGAGCATTTGTTTCCTCTATTTAGTACATTGCTGTGTATTTCACTAGACAAGTTCTGACTGAATGTGTTGAGACCCATGTAAACTTTTTATACCCGTTATAATGAGATCTCCACAAATTTAATGTGTAAACAAAATTAGAATCAACAAATTTGGAGAAACTGTGTagaatttacatatttttcaacCGTATGAATGACCTCAGAATACAGACAAAAGGAGAAACATTTTCTAGTCACATGGTGCAAGAAATGTATACCGTTTCTCAGGTAGACGTTGAAGTACTGCCACATGCCTTGGAATGTGTTAACACTGCAGTTACAGAACACATCTTgcttacacactcacactaaatacatttgattgagAGAAGAGCAAGGCTTTCTTTTCAAAGATATCTCCCTGCAGATAGCGAAATTATTGTTTTCagccttatttaaaaaaaataataaaaaaaaatacataacttcTGGAGTGCATTCAAAATGAGCTCAAAATGAAGCACttcatattaacaaaataacCCTCACCGCTAGATGAGTTACTGGTAGCACAGAGTAATAACAGTCTGTCTTCATTGACATTTTCAAGGCATTTCCTTGCTTTCCTCTGTGTGACCTCTGTGAATTGTATTACTGAAATAGACTGAGAGGTAAATGCTGAATGAAAGAGAGGGTATTGGTTTAAAGAGTGGCCTCGTGGTCCTTCACGCTGATTTCTATTGCAATAATGATTCCAAAGTTCAAGACCTGAGCAGGATAGAAATAATGAGTAGCATAGTCATTACTGCAAATTACATCTACCATTTAAGACCCTTATTAAACTCAAACCCGTGGACAGTGATTAGTCTGGAACTTTGGTACATGTTCCTTTTATCTGAACTAGATTATAACTTTTAATATCAATGATTTACCTTTCACACACAATGTTTCAGAATTGCAAAATGATAGATTAGGGAATCTAATTAGGGAAAAAGTTTCAaggtaaagtgtttttttttaactaatacTTCTAGGGCTTAGAATAAAGCAGGAAGCATCAGAAGCATTGCTCttcactttaaatatttgtgaaatacacaataaaattgATCCTGCAGTGTAATCTGACCGTTAGCTggagcaaaaaaaagaaaccttgcTTAACAAATGGTAATAGTCAACTTCATACCAATGTTAACATAACGGAAAGACAGAGCTCGCTGCTCCTAAAGCCTGTTTTCTCCCTTGCACTGATCTCCATGACATATACTAATTTTCTGGCATAATCTGTAGGAGTGTGTACAGTATGCTGTTTCAGGTTTTGTATGCATCTGTAAGTGTTTGGCTCTTGTTTGCCAATGACAGGCTGCAGATTTCCTTTTAACCCCCGCATATTCTGAAGAAGTTAGTTAGATCAAacacatacttttttttaaacaaatatatattgtaaatctGTCAAACAAActgttcaatgtattttttattttttatttttttatttttctaatttcataGCATTCGGTCACAAAATGGATGGTTATTGTCttgtaaaacaaactgaagatCGCACTAAACTGGCAGCTCATAACCAATCAACACTGACCTTACTATATCTGTTATGTACAGAGGTTACTCTAAAAGTTTAGATATTATCTGGGAACCATTTGTGATTTGCATAACTTATGCcggtttaattaattcatatctTAAACCTCATGTTCAGTTTCTCGTAATTAGCAATGGATCCATAATCTATTGATTTTTGCAGTTATGGTTGAGTGAGTTTAGACTTAGATACtccttacattaaaatacatttcctgtagTAGAAACAAACCCAAAATGTCTAAGGACAATGATTTTATTCTAGACGTGGCTCTCCGATGGGAACTTCCCACTTTGACTTGGCCCTATCCCTGCCCTTGTAAGAATTCCCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40745 lncRNA upstream 869893 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 1268806 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 1457920 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 1565319 9809884 ~ 9812637 (+) True G32418
TU40475 lncRNA upstream 1627686 9742247 ~ 9750270 (+) False G32321
TU40936 lncRNA downstream 184107 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 184107 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 552712 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 1161150 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 1165034 12613285 ~ 12613926 (+) True G32893
AMCG00019259 mRNA upstream 23850 11353219 ~ 11354106 (+) True AMCG00019259
AMCG00019255 mRNA upstream 97024 11268008 ~ 11280932 (+) True AMCG00019255
AMCG00019254 mRNA upstream 290261 11077971 ~ 11087695 (+) True AMCG00019254
AMCG00019248 mRNA upstream 668524 10701276 ~ 10709432 (+) True AMCG00019248
AMCG00019245 mRNA upstream 719158 10648579 ~ 10658798 (+) True AMCG00019245
AMCG00019261 mRNA downstream 23871 11472122 ~ 11477288 (+) True AMCG00019261
AMCG00019262 mRNA downstream 76948 11525199 ~ 11535371 (+) True AMCG00019262
AMCG00019264 mRNA downstream 105969 11554220 ~ 11567397 (+) True AMCG00019264
AMCG00019263 mRNA downstream 137542 11585793 ~ 11599813 (+) True AMCG00019263
AMCG00019265 mRNA downstream 158765 11607016 ~ 11612075 (+) True AMCG00019265
TU40734 other upstream 968459 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 1749294 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 1838745 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2029137 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 2993364 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2991002 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 3716097 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 4595691 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 9159223 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 9159223 20607474 ~ 20610889 (+) True G34170

Expression Profile