RNA id: TU41056


Basic Information

Item Value
RNA id TU41056
length 855
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G32773
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11930504 ~ 11979273 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttaagaatttttttctttttttatttcttcaatgttAAATACCATGGGACAGGATTTTAAGAATGGAGAGCTTTTTTTCAGTCAACATTTGCCTCACAAAGGATATATAAtttgtggcaaaaaaaaaaaaagaataaagtcTGCGTTGGTATCAGCAGGGACaggaaaagaatgaaaaatttACAAGGAAGGAGGCACCGATTTCCCCAGCAGACCTCTTGACATTCCCAAAGAAAGGAAGAGTACGAATCGGACTAACAAATTGAATTTCAAGAGGCAATCCAGCAACAGGTAGCAAAAATTCtttttaaaaggattaaaataacatttacaagaCACTTAACATTCCATTCAACTCTTATTAAaaccacagagagaaagagagaacaatTCATTTTTTACGATTTTTTATCAAGGGCTCTATGTAGTACCTTGACACGCCTGCTATTGTTGTTTtgataatgtacattttttttttttttcaattcccCAAACCCCCCgaagaactgaaaacaaaataaaggaaaacttttcttcttttgtgtgtgtactaacCGTGTGAGAGATTGTTAAAGGCAAGGCCTGTTTATGATGCTGTACACAAACATGGTCACTGTGGGCCATACTACCAATGATATGGCAGATCAACGAAAAGACATTTCCAGGCCTAAATGAGCACGTTTGCATGCTTCTCCTCTACAAGATGAACTTCCCTAGGAAGAATCCGATGAAAATGGCTGCAATTACGacaaggagagagggaagagagttGGATCCGTTGTCTCTACCCATTAATCCTCCCGTGTTTGATACTATGTTGTCTGATCGAGCTACCTTCCTCATTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41035 lncRNA downstream 45002 11852108 ~ 11885502 (-) False AMCG00019272
TU40972 lncRNA downstream 294187 11633509 ~ 11636317 (-) True G32706
TU40958 lncRNA downstream 329833 11596816 ~ 11600671 (-) True G32693
TU40884 lncRNA downstream 810997 11118708 ~ 11119507 (-) True G32635
TU40817 lncRNA downstream 961731 10968517 ~ 10968773 (-) True G32587
TU41062 lncRNA upstream 21677 12000950 ~ 12001165 (-) True G32779
TU41067 lncRNA upstream 80351 12059624 ~ 12060251 (-) True G32784
TU41072 lncRNA upstream 83005 12062278 ~ 12067052 (-) True G32786
TU41123 lncRNA upstream 387513 12366786 ~ 12367226 (-) True G32825
TU41125 lncRNA upstream 434833 12414106 ~ 12417819 (-) False AMCG00019284
AMCG00019272 mRNA downstream 44933 11869464 ~ 11885571 (-) True AMCG00019272
AMCG00019266 mRNA downstream 156187 11758115 ~ 11774317 (-) True AMCG00019266
AMCG00019256 mRNA downstream 602145 11283571 ~ 11328359 (-) True AMCG00019256
AMCG00019258 mRNA downstream 734713 11177703 ~ 11195791 (-) True AMCG00019258
AMCG00019257 mRNA downstream 804787 11120227 ~ 11125717 (-) True AMCG00019257
AMCG00019278 mRNA upstream 73387 12052660 ~ 12053218 (-) True AMCG00019278
AMCG00019279 mRNA upstream 99289 12078562 ~ 12138607 (-) True AMCG00019279
AMCG00019284 mRNA upstream 433881 12413154 ~ 12423320 (-) True AMCG00019284
AMCG00019288 mRNA upstream 463415 12442688 ~ 12445186 (-) True AMCG00019288
AMCG00019286 mRNA upstream 475806 12455079 ~ 12463992 (-) True AMCG00019286
TU39603 other downstream 6994508 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 9751854 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 9847233 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 9847233 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10219961 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1682843 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 2512618 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 2512618 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 2972569 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3713209 15692482 ~ 15721452 (-) True G33381

Expression Profile