RNA id: TU41123


Basic Information

Item Value
RNA id TU41123
length 441
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G32825
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12366786 ~ 12367226 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGCAGTCAATGAGCTGATACTCATTCGACCTCTCAAAGCATGCTTTTACTCCTTCATCATCCCACAGCTTCTTCGCATGGTCAAAGAATtcctgtttaaaaaagaaaaggaaaaagatgaATCACCATATTCACATACACGcgtacaaaaaaacaacaacctgaaaACAAAGCTAGTCTAATGTTTTGTCCACAgtgcatacattaaaaataaaaagacgaCTAGCTTcaatacaaagaaacaatatagtttttaactttgtttccCAGTTTTCAACGCCATTGTTGACTTAAATTTAACGTGTGACGTGTAATTGGAACAGAGAAGACACTAGGAAGTGGCTGAATTGATCCACTGAGCCAGAGCCCCCCCACAGGGTGAGTGACGGCTCTCAGTGCCTGGGGGTGATCAGCTGGAACACAAGCTATGTCCCACACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41072 lncRNA downstream 299734 12062278 ~ 12067052 (-) True G32786
TU41067 lncRNA downstream 306535 12059624 ~ 12060251 (-) True G32784
TU41062 lncRNA downstream 365621 12000950 ~ 12001165 (-) True G32779
TU41056 lncRNA downstream 387513 11930504 ~ 11979273 (-) True G32773
TU41035 lncRNA downstream 481284 11852108 ~ 11885502 (-) False AMCG00019272
TU41125 lncRNA upstream 46880 12414106 ~ 12417819 (-) False AMCG00019284
TU41149 lncRNA upstream 85371 12452597 ~ 12453627 (-) True G32844
TU41374 lncRNA upstream 736727 13103953 ~ 13106250 (-) True G33030
TU41434 lncRNA upstream 801210 13168436 ~ 13171846 (-) False AMCG00019312
TU41440 lncRNA upstream 888137 13255363 ~ 13257313 (-) True G33070
AMCG00019279 mRNA downstream 228179 12078562 ~ 12138607 (-) True AMCG00019279
AMCG00019278 mRNA downstream 313568 12052660 ~ 12053218 (-) True AMCG00019278
AMCG00019277 mRNA downstream 412327 11936104 ~ 11954459 (-) True AMCG00019277
AMCG00019272 mRNA downstream 481215 11869464 ~ 11885571 (-) True AMCG00019272
AMCG00019266 mRNA downstream 592469 11758115 ~ 11774317 (-) True AMCG00019266
AMCG00019284 mRNA upstream 45928 12413154 ~ 12423320 (-) True AMCG00019284
AMCG00019288 mRNA upstream 75462 12442688 ~ 12445186 (-) True AMCG00019288
AMCG00019286 mRNA upstream 87853 12455079 ~ 12463992 (-) True AMCG00019286
AMCG00019287 mRNA upstream 98900 12466126 ~ 12504550 (-) True AMCG00019287
AMCG00019291 mRNA upstream 233307 12600533 ~ 12613847 (-) True AMCG00019291
TU39603 other downstream 7430790 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10188136 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 10283515 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 10283515 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10656243 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1294890 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 2124665 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 2124665 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 2584616 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3325256 15692482 ~ 15721452 (-) True G33381

Expression Profile